RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	SMT3	Q12306	101 aa	Known RBP	11.78	□□□□□ -0.52
CCC1	YLR220W	YOP1	Q12402	180 aa		11.78	□□□□□ -0.52
CCC1	YLR220W	NHP6A	P11632	93 aa	Known RBP	11.77	□□□□□ -0.53
CCC1	YLR220W	CPT1	P17898	393 aa		11.77	□□□□□ -0.53
CCC1	YLR220W	YER135C	P40082	130 aa		11.77	□□□□□ -0.53
CCC1	YLR220W	DAN1	P47178	298 aa		11.77	□□□□□ -0.53
CCC1	YLR220W	MGA1	P53050	456 aa		11.77	□□□□□ -0.53
CCC1	YLR220W	YLR342W-A	Q3E810	57 aa		11.77	□□□□□ -0.53
CCC1	YLR220W	QRI5	P32344	111 aa		11.76	□□□□□ -0.53
CCC1	YLR220W	YOR105W	Q08504	108 aa		11.76	□□□□□ -0.53
CCC1	YLR220W	UTP23	Q12339	254 aa	Known RBP	11.76	□□□□□ -0.53
CCC1	YLR220W	YHR022C	P38763	256 aa		11.75	□□□□□ -0.53
CCC1	YLR220W	YJR096W	P47137	282 aa		11.75	□□□□□ -0.53
CCC1	YLR220W	MRPS8	Q03799	155 aa		11.75	□□□□□ -0.53
CCC1	YLR220W	DAD1	Q12248	94 aa		11.75	□□□□□ -0.53
CCC1	YLR220W	FZF1	P32805	299 aa		11.74	□□□□□ -0.53
CCC1	YLR220W	MIG3	P39943	394 aa		11.74	□□□□□ -0.53
CCC1	YLR220W	YLR281C	Q05863	155 aa		11.74	□□□□□ -0.53
CCC1	YLR220W	MOG1	P47123	218 aa		11.73	□□□□□ -0.53
CCC1	YLR220W	YDL183C	P48569	320 aa		11.73	□□□□□ -0.53
CCC1	YLR220W	YFR045W	P43617	309 aa		11.72	□□□□□ -0.53
CCC1	YLR220W	HAM1	P47119	197 aa	Known RBP	11.72	□□□□□ -0.53
CCC1	YLR220W	APS2	Q00381	147 aa		11.71	□□□□□ -0.53
CCC1	YLR220W	YLR122C	Q12312	125 aa		11.71	□□□□□ -0.53
CCC1	YLR220W	YCL001W-B	Q96VH2	84 aa		11.71	□□□□□ -0.53
CCC1	YLR220W	GIM5	Q04493	163 aa		11.69	□□□□□ -0.54
CCC1	YLR220W	YDR215C	Q12240	137 aa		11.69	□□□□□ -0.54
CCC1	YLR220W	SNU23	Q12368	194 aa	Predicted RBP	11.69	□□□□□ -0.54
CCC1	YLR220W	RPL12A	P0CX53	165 aa	Known RBP	11.68	□□□□□ -0.54
CCC1	YLR220W	RPL12B	P0CX54	165 aa		11.68	□□□□□ -0.54
CCC1	YLR220W	GET2	P40056	285 aa		11.68	□□□□□ -0.54
CCC1	YLR220W	VAR1	P02381	398 aa		11.67	□□□□□ -0.54
CCC1	YLR220W	HMRA1	P0CY11	126 aa		11.67	□□□□□ -0.54
CCC1	YLR220W	UPS3	Q04006	179 aa		11.67	□□□□□ -0.54
CCC1	YLR220W	MSC3	Q05812	728 aa		11.67	□□□□□ -0.54
CCC1	YLR220W	ZEO1	Q08245	113 aa		11.67	□□□□□ -0.54
CCC1	YLR220W	MRPL31	P14063	131 aa	Predicted RBP	11.66	□□□□□ -0.54
CCC1	YLR220W	YGL010W	P25338	174 aa		11.66	□□□□□ -0.54
CCC1	YLR220W	MIX23	P38162	196 aa		11.66	□□□□□ -0.54
CCC1	YLR220W	PAU5	P43575	122 aa		11.66	□□□□□ -0.54
CCC1	YLR220W	COX16	P47081	118 aa		11.66	□□□□□ -0.54
CCC1	YLR220W	YML108W	Q03759	105 aa		11.66	□□□□□ -0.54
CCC1	YLR220W	CYC7	P00045	113 aa		11.64	□□□□□ -0.55
CCC1	YLR220W	MLF3	P32047	452 aa		11.64	□□□□□ -0.55
CCC1	YLR220W	YBR013C	P38215	129 aa		11.64	□□□□□ -0.55
CCC1	YLR220W	COX12	Q01519	83 aa		11.64	□□□□□ -0.55
CCC1	YLR220W	YOL085C	Q99345	113 aa		11.64	□□□□□ -0.55
CCC1	YLR220W	NSE4	P43124	402 aa		11.63	□□□□□ -0.55
CCC1	YLR220W	ATG33	Q06485	197 aa		11.63	□□□□□ -0.55
CCC1	YLR220W	TIM22	Q12328	207 aa		11.63	□□□□□ -0.55
CCC1	YLR220W	YNR034W-A	Q3E841	98 aa		11.63	□□□□□ -0.55
CCC1	YLR220W	RPL2A	P0CX45	254 aa	Known RBP	11.61	□□□□□ -0.55
CCC1	YLR220W	RPL2B	P0CX46	254 aa	Known RBP	11.61	□□□□□ -0.55
CCC1	YLR220W	RPS11A	P0CX47	156 aa	Known RBP	11.61	□□□□□ -0.55
CCC1	YLR220W	RPS11B	P0CX48	156 aa	Known RBP	11.61	□□□□□ -0.55
CCC1	YLR220W	CUP2	P15315	225 aa		11.61	□□□□□ -0.55
CCC1	YLR220W	GTT1	P40582	234 aa		11.61	□□□□□ -0.55
CCC1	YLR220W	PAU19	P0CE85	124 aa		11.6	□□□□□ -0.55
CCC1	YLR220W	PAU21	P0CE86	164 aa		11.6	□□□□□ -0.55
CCC1	YLR220W	PAU22	P0CE87	164 aa		11.6	□□□□□ -0.55
CCC1	YLR220W	PAU3	P25610	124 aa		11.6	□□□□□ -0.55
CCC1	YLR220W	YFR035C	P43608	114 aa		11.6	□□□□□ -0.55
CCC1	YLR220W	AUA1	P32450	94 aa		11.59	□□□□□ -0.55
CCC1	YLR220W	VMA16	P23968	213 aa		11.58	□□□□□ -0.56
CCC1	YLR220W	AGA1	P32323	725 aa		11.58	□□□□□ -0.56
CCC1	YLR220W	DAD2	P36162	133 aa		11.58	□□□□□ -0.56
CCC1	YLR220W	RPB11	P38902	120 aa		11.58	□□□□□ -0.56
CCC1	YLR220W	YGR026W	P53217	278 aa		11.58	□□□□□ -0.56
CCC1	YLR220W	PAM17	P36147	197 aa		11.57	□□□□□ -0.56
CCC1	YLR220W	NRG2	P38082	220 aa		11.57	□□□□□ -0.56
CCC1	YLR220W	TIM11	P81449	96 aa	Predicted RBP	11.57	□□□□□ -0.56
CCC1	YLR220W	ARC18	Q05933	178 aa	Known RBP	11.57	□□□□□ -0.56
CCC1	YLR220W	IRC22	P40006	225 aa		11.56	□□□□□ -0.56
CCC1	YLR220W	VHS2	P40463	436 aa		11.56	□□□□□ -0.56
CCC1	YLR220W	TMA17	Q12513	150 aa		11.56	□□□□□ -0.56
CCC1	YLR220W	KEG1	P43614	200 aa		11.55	□□□□□ -0.56
CCC1	YLR220W	CSM4	Q08955	156 aa		11.55	□□□□□ -0.56
CCC1	YLR220W	TY1A-H	P0C2I4	478 aa	Known RBP	11.54	□□□□□ -0.56
CCC1	YLR220W	YDR366C	P87287	132 aa		11.54	□□□□□ -0.56
CCC1	YLR220W	YBR200W-A	Q3E755	54 aa		11.54	□□□□□ -0.56
CCC1	YLR220W	PAU7	P39545	55 aa		11.53	□□□□□ -0.56
CCC1	YLR220W	BRP1	P53194	125 aa		11.53	□□□□□ -0.56
CCC1	YLR220W	DIA1	P54005	336 aa		11.53	□□□□□ -0.56
CCC1	YLR220W	SCW10	Q04951	389 aa		11.52	□□□□□ -0.57
CCC1	YLR220W	RPL27A	P0C2H6	136 aa	Known RBP	11.51	□□□□□ -0.57
CCC1	YLR220W	Q0255	P03881	472 aa		11.5	□□□□□ -0.57
CCC1	YLR220W	YHR140W	P38842	239 aa		11.5	□□□□□ -0.57
CCC1	YLR220W	SUR2	P38992	349 aa		11.5	□□□□□ -0.57
CCC1	YLR220W	THG1	P53215	237 aa	Known RBP	11.5	□□□□□ -0.57
CCC1	YLR220W	YCH1	P42937	148 aa		11.49	□□□□□ -0.57
CCC1	YLR220W	GPI19	Q04082	140 aa		11.49	□□□□□ -0.57
CCC1	YLR220W	POM33	Q12164	279 aa		11.49	□□□□□ -0.57
CCC1	YLR220W	RPL16B	P26785	198 aa	Known RBP	11.48	□□□□□ -0.57
CCC1	YLR220W	RRT13	P40042	185 aa		11.48	□□□□□ -0.57
CCC1	YLR220W	VAM10	Q08474	114 aa		11.48	□□□□□ -0.57
CCC1	YLR220W	ZRT1	P32804	376 aa		11.47	□□□□□ -0.57
CCC1	YLR220W	RDS3	Q06835	107 aa	Predicted RBP	11.47	□□□□□ -0.57
CCC1	YLR220W	RPS22B	Q3E7Y3	130 aa	Known RBP	11.47	□□□□□ -0.57
CCC1	YLR220W	POR1	P04840	283 aa	Known RBP	11.46	□□□□□ -0.57
CCC1	YLR220W	DUO1	P53168	247 aa	Known RBP	11.46	□□□□□ -0.57

Retrieved 100 of 5,963 RNA–protein pairs in 70 ms