RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C OST1P41543 476 aaKnown RBP4.55□□□□□ -1.68
VPS1YKR001C BXI1P48558 297 aa4.55□□□□□ -1.68
VPS1YKR001C YMR252CQ04814 134 aa4.55□□□□□ -1.68
VPS1YKR001C GAT3Q07928 141 aa4.55□□□□□ -1.68
VPS1YKR001C RPA12P32529 125 aaKnown RBP4.54□□□□□ -1.68
VPS1YKR001C MTC7P32633 139 aa4.54□□□□□ -1.68
VPS1YKR001C SDH3P33421 198 aa4.54□□□□□ -1.68
VPS1YKR001C DSK2P48510 373 aa4.54□□□□□ -1.68
VPS1YKR001C HEM4P06174 275 aa4.54□□□□□ -1.68
VPS1YKR001C SPO13P23624 291 aa4.54□□□□□ -1.68
VPS1YKR001C SMP1P38128 452 aa4.54□□□□□ -1.68
VPS1YKR001C GAT4P40569 121 aa4.54□□□□□ -1.68
VPS1YKR001C FIP1P45976 327 aa4.54□□□□□ -1.68
VPS1YKR001C YLR281CQ05863 155 aa4.54□□□□□ -1.68
VPS1YKR001C MRH1Q12117 320 aaPredicted RBP4.54□□□□□ -1.68
VPS1YKR001C SLH1P53327 1967 aaKnown RBP4.54□□□□□ -1.68
VPS1YKR001C RPB7P34087 171 aa4.53□□□□□ -1.68
VPS1YKR001C PEP8P40335 379 aa4.53□□□□□ -1.68
VPS1YKR001C MPM1P40364 252 aa4.53□□□□□ -1.68
VPS1YKR001C MSA1Q08471 629 aa4.53□□□□□ -1.68
VPS1YKR001C DFM1Q12743 341 aaKnown RBP4.53□□□□□ -1.68
VPS1YKR001C SHE1P38200 338 aa4.52□□□□□ -1.69
VPS1YKR001C YHL018WP38744 120 aaPredicted RBP4.52□□□□□ -1.69
VPS1YKR001C YDL009CQ12210 107 aa4.52□□□□□ -1.69
VPS1YKR001C PRS5Q12265 496 aaKnown RBP4.52□□□□□ -1.69
VPS1YKR001C TIM9O74700 87 aa4.52□□□□□ -1.69
VPS1YKR001C SFT2P38166 215 aa4.52□□□□□ -1.69
VPS1YKR001C UMP1P38293 148 aa4.52□□□□□ -1.69
VPS1YKR001C CTF8P38877 133 aa4.52□□□□□ -1.69
VPS1YKR001C TIM18Q08749 192 aa4.52□□□□□ -1.69
VPS1YKR001C GLT1Q12680 2145 aaKnown RBP4.52□□□□□ -1.69
VPS1YKR001C COX19Q3E731 98 aa4.52□□□□□ -1.69
VPS1YKR001C YOL162WP0CF19 215 aa4.51□□□□□ -1.69
VPS1YKR001C URA5P13298 226 aaKnown RBP4.51□□□□□ -1.69
VPS1YKR001C MRS4P23500 304 aa4.51□□□□□ -1.69
VPS1YKR001C PUB1P32588 453 aaKnown RBP RIP-Chip data4.51□□□□□ -1.69not detected
VPS1YKR001C RPS27AP35997 82 aaKnown RBP4.51□□□□□ -1.69
VPS1YKR001C YRA2P36036 203 aaKnown RBP RIP-Chip data4.51□□□□□ -1.69not detected
VPS1YKR001C RPS27BP38711 82 aa4.51□□□□□ -1.69
VPS1YKR001C YJL028WP47062 111 aa4.51□□□□□ -1.69
VPS1YKR001C SDS23P53172 527 aa4.51□□□□□ -1.69
VPS1YKR001C ASM4Q05166 528 aa4.51□□□□□ -1.69
VPS1YKR001C DAD1Q12248 94 aa4.51□□□□□ -1.69
VPS1YKR001C YDL180WQ12301 547 aa4.51□□□□□ -1.69
VPS1YKR001C SVP26P38869 228 aa4.51□□□□□ -1.69
VPS1YKR001C GGC1P38988 300 aa4.51□□□□□ -1.69
VPS1YKR001C YFL012WP43580 148 aa4.51□□□□□ -1.69
VPS1YKR001C MIC27P50945 234 aa4.51□□□□□ -1.69
VPS1YKR001C YGL262WP53054 175 aa4.51□□□□□ -1.69
VPS1YKR001C MCH4Q08268 501 aa4.51□□□□□ -1.69
VPS1YKR001C YOL160WQ08321 113 aa4.51□□□□□ -1.69
VPS1YKR001C MPD1Q12404 318 aaKnown RBP4.51□□□□□ -1.69
VPS1YKR001C SEC11P15367 167 aa4.5□□□□□ -1.69
VPS1YKR001C UBC4P15731 148 aa4.5□□□□□ -1.69
VPS1YKR001C CNE1P27825 502 aa4.5□□□□□ -1.69
VPS1YKR001C NRG2P38082 220 aa4.5□□□□□ -1.69
VPS1YKR001C GPI18P38211 433 aa4.5□□□□□ -1.69
VPS1YKR001C YBR292CP38357 123 aa4.5□□□□□ -1.69
VPS1YKR001C PHS1P40857 217 aa4.5□□□□□ -1.69
VPS1YKR001C MST27P53176 234 aa4.5□□□□□ -1.69
VPS1YKR001C YML079WQ03629 201 aa4.5□□□□□ -1.69
VPS1YKR001C YER181CP40097 107 aa4.49□□□□□ -1.69
VPS1YKR001C LYS5P50113 272 aa4.49□□□□□ -1.69
VPS1YKR001C IRC25Q07951 179 aa4.49□□□□□ -1.69
VPS1YKR001C ATG41Q12048 136 aa4.49□□□□□ -1.69
VPS1YKR001C ATO3Q12359 275 aa4.49□□□□□ -1.69
VPS1YKR001C YAL063C-AQ3E791 96 aa4.49□□□□□ -1.69
VPS1YKR001C YCL021W-AQ96VH3 125 aa4.49□□□□□ -1.69
VPS1YKR001C ECM34P38728 170 aa4.49□□□□□ -1.69
VPS1YKR001C HTD2P38790 280 aaKnown RBP4.49□□□□□ -1.69
VPS1YKR001C YIA6P40556 373 aa4.49□□□□□ -1.69
VPS1YKR001C YNL234WP53857 426 aa4.49□□□□□ -1.69
VPS1YKR001C SMD1Q02260 146 aaPredicted RBP4.49□□□□□ -1.69
VPS1YKR001C YFL041W-AQ3E817 63 aa4.49□□□□□ -1.69
VPS1YKR001C RPL11AP0C0W9 174 aaKnown RBP4.48□□□□□ -1.69
VPS1YKR001C NHP2P32495 156 aaPredicted RBP4.48□□□□□ -1.69
VPS1YKR001C TOM6P33448 61 aa4.48□□□□□ -1.69
VPS1YKR001C FYV4P38783 130 aaPredicted RBP4.48□□□□□ -1.69
VPS1YKR001C YNL046WP53956 172 aa4.48□□□□□ -1.69
VPS1YKR001C RPL11BQ3E757 174 aaPredicted RBP4.48□□□□□ -1.69
VPS1YKR001C HSP10P38910 106 aa4.48□□□□□ -1.69
VPS1YKR001C PEX17P40155 199 aa4.48□□□□□ -1.69
VPS1YKR001C TDA4P47153 279 aa4.48□□□□□ -1.69
VPS1YKR001C NCE102Q12207 173 aaRIP-Chip data4.48□□□□□ -1.69not detected
VPS1YKR001C TSC3Q3E790 80 aa4.48□□□□□ -1.69
VPS1YKR001C BOL2P53082 120 aa4.47□□□□□ -1.69
VPS1YKR001C YMR175W-AQ3E766 64 aa4.47□□□□□ -1.69
VPS1YKR001C YCR024C-BQ3E7Z8 88 aa4.47□□□□□ -1.69
VPS1YKR001C APS1P35181 156 aa4.46□□□□□ -1.69
VPS1YKR001C SCS22Q6Q595 175 aa4.46□□□□□ -1.69
VPS1YKR001C Q0255P03881 472 aa4.46□□□□□ -1.7
VPS1YKR001C AHT1P29589 182 aa4.46□□□□□ -1.7
VPS1YKR001C OM14P38325 134 aa4.46□□□□□ -1.7
VPS1YKR001C CUZ1P53899 274 aa4.46□□□□□ -1.7
VPS1YKR001C YOR376W-AQ3E805 51 aa4.46□□□□□ -1.7
VPS1YKR001C MIC10Q96VH5 97 aa4.46□□□□□ -1.7
VPS1YKR001C CDC39P25655 2108 aaKnown RBP4.46□□□□□ -1.7
VPS1YKR001C HEM2P05373 342 aa4.45□□□□□ -1.7
VPS1YKR001C SPT4P32914 102 aaPredicted RBP4.45□□□□□ -1.7
VPS1YKR001C YPS5P53057 165 aa4.45□□□□□ -1.7
Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms