RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 SIX2Q9NPC8 291 aa18.19■□□□□ 0.5
HDAC6-235ENST00000495515 HMGXB4Q9UGU5 601 aa18.19■□□□□ 0.5
HDAC6-235ENST00000495515 SLC27A5Q9Y2P5 690 aa18.19■□□□□ 0.5
HDAC6-235ENST00000495515 YIPF1Q9Y548 306 aa18.19■□□□□ 0.5
HDAC6-235ENST00000495515 RFPL2O75678 378 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 VNN2O95498 520 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 PAEPP09466 180 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 KRT5P13647 590 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 UCHL3P15374 230 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 ACO1P21399 889 aaKnown RBP18.18■□□□□ 0.5
HDAC6-235ENST00000495515 RAD23BP54727 409 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 ORC1Q13415 861 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 SMAD4Q13485 552 aaKnown RBP18.18■□□□□ 0.5
HDAC6-235ENST00000495515 VEPH1Q14D04 833 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 ARHGAP44Q17R89 818 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 LEXMQ3ZCV2 418 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 ATAT1Q5SQI0 421 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 IQCEQ6IPM2 695 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 TMC5Q6UXY8 1006 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 GPR149Q86SP6 731 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 C12orf76Q8N812 135 aaPredicted RBP18.18■□□□□ 0.5
HDAC6-235ENST00000495515 SMRP1Q8NCR6 262 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 SMG7Q92540 1137 aaKnown RBP18.18■□□□□ 0.5
HDAC6-235ENST00000495515 FAM207AQ9NSI2 230 aaPredicted RBP18.18■□□□□ 0.5
HDAC6-235ENST00000495515 SIK3Q9Y2K2 1263 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 ASB3Q9Y575 518 aa18.18■□□□□ 0.5
HDAC6-235ENST00000495515 A0A1W2PQC6 194 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 TRIM66O15016 1216 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 CBFA2T2O43439 604 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 PAPLNO95428 1278 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 CYP2F1P24903 491 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 ANXA13P27216 316 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 USP8P40818 1118 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 MTHFRP42898 656 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 TWF1Q12792 350 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 NR1I3Q14994 352 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 CLUL1Q15846 466 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 GJB7Q6PEY0 223 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 ITIH5Q86UX2 942 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 SLC4A11Q8NBS3 891 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 RBBP8NLQ8NC74 664 aaPredicted RBP18.17■□□□□ 0.5
HDAC6-235ENST00000495515 CYFIP2Q96F07 1278 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 SMARCD1Q96GM5 515 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 CEP295NLQ96MC4 621 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 ZNF512Q96ME7 567 aaPredicted RBP18.17■□□□□ 0.5
HDAC6-235ENST00000495515 NAP1L5Q96NT1 182 aaPredicted RBP18.17■□□□□ 0.5
HDAC6-235ENST00000495515 NECTIN4Q96NY8 510 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 APOL5Q9BWW9 433 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 COL25A1Q9BXS0 654 aaPredicted RBP18.17■□□□□ 0.5
HDAC6-235ENST00000495515 B3GNT5Q9BYG0 378 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 S1PR5Q9H228 398 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 CNTN6Q9UQ52 1028 aa18.17■□□□□ 0.5
HDAC6-235ENST00000495515 EYSQ5T1H1 3165 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 CCL16O15467 120 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 TEX33O43247 280 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 VDRP11473 427 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 CD19P15391 556 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 BDNFP23560 247 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 GRIK1P39086 918 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 APBA1Q02410 837 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 RAPGEF1Q13905 1077 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 STILQ15468 1287 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 TAF12Q16514 161 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 CCDC142Q17RM4 750 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 SGO2Q562F6 1265 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 FAM35AQ86V20 835 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 SCN4BQ8IWT1 228 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 C12orf29Q8N999 325 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 SLC2A14Q8TDB8 520 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 ATXN2LQ8WWM7 1075 aaKnown RBP18.16■□□□□ 0.5
HDAC6-235ENST00000495515 SHC3Q92529 594 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 HNRNPABQ99729 332 aaKnown RBP18.16■□□□□ 0.5
HDAC6-235ENST00000495515 STK33Q9BYT3 514 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 CRISPLD1Q9H336 500 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 FAM49BQ9NUQ9 324 aa18.16■□□□□ 0.5
HDAC6-235ENST00000495515 UNC80Q8N2C7 3258 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 CUL9Q8IWT3 2517 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 FAM200BP0CF97 657 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 CCDC130P13994 396 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 CDR1P51861 262 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 SLC8A3P57103 927 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 POLR2FP61218 127 aaKnown RBP18.15■□□□□ 0.5
HDAC6-235ENST00000495515 ARHGAP17Q68EM7 881 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 DPY19L2P1Q6NXN4 242 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 FUKQ8N0W3 1084 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 TTC9BQ8N6N2 239 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 LEMD2Q8NC56 503 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 ZNF707Q96C28 371 aaPredicted RBP18.15■□□□□ 0.5
HDAC6-235ENST00000495515 SPAG5Q96R06 1193 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 LPIN3Q9BQK8 851 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 ZNF518BQ9C0D4 1074 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 GANQ9H2C0 597 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 DMAP1Q9NPF5 467 aaPredicted RBP18.15■□□□□ 0.5
HDAC6-235ENST00000495515 PRDM6Q9NQX0 595 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 EHD2Q9NZN4 543 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 IFNKQ9P0W0 207 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 FHOD1Q9Y613 1164 aa18.15■□□□□ 0.5
HDAC6-235ENST00000495515 CLDN5O00501 218 aa18.14■□□□□ 0.49
HDAC6-235ENST00000495515 MBTPS2O43462 519 aa18.14■□□□□ 0.49
HDAC6-235ENST00000495515 AP1G2O75843 785 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms