RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 ZNF557Q8N988 423 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SRPK1Q96SB4 655 aaKnown RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SPATA16Q9BXB7 569 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SEZ6LQ9BYH1 1024 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 CNOT10Q9H9A5 744 aaKnown RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ARHGAP10A1A4S6 786 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 GSTA4O15217 222 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 LZTS3O60299 673 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 LSM8O95777 96 aaKnown RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ATP1A2P50993 1020 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 DHX34Q14147 1143 aaKnown RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 LLGL2Q6P1M3 1020 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 C7orf61Q8IZ16 206 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 TMEM134Q9H6X4 195 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 RRN3Q9NYV6 651 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 TRAV19A0A0A6YYK7 116 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 HMGB1P1B2RPK0 211 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 SEPT4O43236 478 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 FARP2O94887 1054 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 INHAP05111 366 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 YWHAQP27348 245 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ZNF211Q13398 564 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 PDAP1Q13442 181 aaKnown RBP11.22□□□□□ -0.61
PTCH1-206ENST00000421141 CRLF3Q8IUI8 442 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 HS6ST3Q8IZP7 471 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ATP11CQ8NB49 1132 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 TSPAN17Q96FV3 270 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 ASAH2Q9NR71 780 aa11.22□□□□□ -0.61
PTCH1-206ENST00000421141 A0A087WUV0 522 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-206ENST00000421141 FAM47DPA6NHR8 397 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 C2orf81A6NN90 581 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 KIF3CO14782 793 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 ZMYND10O75800 440 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 HIST1H2AGP0C0S8 130 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-206ENST00000421141 HIST1H2ADP20671 130 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 IFNA8P32881 189 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 SOX10P56693 466 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 CRHR2Q13324 411 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 NAB2Q15742 525 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 SMTNL2Q2TAL5 461 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 BTNL9Q6UXG8 535 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 HIST1H2AHQ96KK5 128 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 GAD1Q99259 594 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 HIST1H2AJQ99878 128 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 H2AFJQ9BTM1 129 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 FHOD1Q9Y613 1164 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 USP41Q3LFD5 358 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 TSPAN18Q96SJ8 248 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 YIPF2Q9BWQ6 316 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 TRIM45Q9H8W5 580 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-206ENST00000421141 TSR3Q9UJK0 312 aaKnown RBP11.21□□□□□ -0.61
PTCH1-206ENST00000421141 VPS9D1Q9Y2B5 631 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 ANO9A1A5B4 782 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 NFKBIEO00221 500 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 SUN1O94901 812 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 EIF4BP23588 611 aaKnown RBP11.21□□□□□ -0.61
PTCH1-206ENST00000421141 TOB1P50616 345 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-206ENST00000421141 RNF135Q8IUD6 432 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 PGLYRP2Q96PD5 576 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 EML4Q9HC35 981 aaKnown RBP11.21□□□□□ -0.61
PTCH1-206ENST00000421141 VPS28Q9UK41 221 aa11.21□□□□□ -0.61
PTCH1-206ENST00000421141 SLC12A8A0AV02 714 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 CFAP69A5D8W1 941 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 LACTBL1A8MY62 500 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 SLC9A1P19634 815 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 OAS2P29728 719 aaKnown RBP11.21□□□□□ -0.62
PTCH1-206ENST00000421141 RPL9P32969 192 aaKnown RBP11.21□□□□□ -0.62
PTCH1-206ENST00000421141 MNAT1P51948 309 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 ATXN3P54252 364 aaPredicted RBP11.21□□□□□ -0.62
PTCH1-206ENST00000421141 ATL2Q8NHH9 583 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 C1QTNF7Q9BXJ2 289 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 ZFATQ9P243 1243 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 SUN2Q9UH99 717 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 ORC6Q9Y5N6 252 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 SMIM35A0A1B0GVV1 85 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 PON1P27169 355 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 ALS2CLQ60I27 953 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 C1orf131Q8NDD1 294 aaKnown RBP11.21□□□□□ -0.62
PTCH1-206ENST00000421141 KDM4CQ9H3R0 1056 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 SLC28A3Q9HAS3 691 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 NHSQ6T4R5 1651 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 MOXD2PA6NHM9 499 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 SELPP16109 830 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 RGS4P49798 205 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 GALCP54803 685 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 KLHDC7AQ5VTJ3 777 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 OOSP2Q86WS3 158 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 PALB2Q86YC2 1186 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 COPS5Q92905 334 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 POP1Q99575 1024 aaKnown RBP11.21□□□□□ -0.62
PTCH1-206ENST00000421141 HDAC6Q9UBN7 1215 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 NCKAP1Q9Y2A7 1128 aa11.21□□□□□ -0.62
PTCH1-206ENST00000421141 COL1A1P02452 1464 aaPredicted RBP11.2□□□□□ -0.62
PTCH1-206ENST00000421141 CYTH3O43739 400 aa11.2□□□□□ -0.62
PTCH1-206ENST00000421141 HSPA4LO95757 839 aa11.2□□□□□ -0.62
PTCH1-206ENST00000421141 CCR1P32246 355 aa11.2□□□□□ -0.62
PTCH1-206ENST00000421141 FMR1Q06787 632 aaKnown RBP eCLIP11.2□□□□□ -0.622e-7■■■■■ 26.8
PTCH1-206ENST00000421141 BOLA3Q53S33 107 aa11.2□□□□□ -0.62
PTCH1-206ENST00000421141 ZDHHC17Q8IUH5 632 aa11.2□□□□□ -0.62
PTCH1-206ENST00000421141 CALML6Q8TD86 181 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms