RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ARID2Q68CP9 1835 aa17.2■□□□□ 0.34
SDC4-201ENST00000372733 TCRBV5S1A1TA0A578 114 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 GSC2O15499 205 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 HNRNPCL1O60812 293 aaKnown RBP17.19■□□□□ 0.34
SDC4-201ENST00000372733 DGAT1O75907 488 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 HARSP12081 509 aaKnown RBP17.19■□□□□ 0.34
SDC4-201ENST00000372733 CHRNA5P30532 468 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 ZBTB16Q05516 673 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 DLGAP5Q15398 846 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 MTERF2Q49AM1 385 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 THEMIS2Q5TEJ8 643 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 RINLQ6ZS11 566 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 NAT8LQ8N9F0 302 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 ZWILCHQ9H900 591 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 PDLIM7Q9NR12 457 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 SCAF8Q9UPN6 1271 aaKnown RBP17.19■□□□□ 0.34
SDC4-201ENST00000372733 AGTPBP1Q9UPW5 1226 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 CNTN6Q9UQ52 1028 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 SRCAPQ6ZRS2 3230 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 SIGLEC16A6NMB1 481 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 TM9SF1O15321 606 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 GYG2O15488 501 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 PTPN7P35236 360 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 VHLP40337 213 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 ARFIP2P53365 341 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 KLHL38Q2WGJ6 581 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 FAM182AQ5T1J6 154 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 SNX30Q5VWJ9 437 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 CCDC60Q8IWA6 550 aaPredicted RBP17.19■□□□□ 0.34
SDC4-201ENST00000372733 DTX3LQ8TDB6 740 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 ATP6V0A1Q93050 837 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 SKA1Q96BD8 255 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 SLC38A10Q9HBR0 1119 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 CHMP2BQ9UQN3 213 aa17.19■□□□□ 0.34
SDC4-201ENST00000372733 KIF3CO14782 793 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 CALB1P05937 261 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 RPL22P35268 128 aaKnown RBP17.18■□□□□ 0.34
SDC4-201ENST00000372733 ZNF132P52740 706 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 NRLP54845 237 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 NCOA4Q13772 614 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 SPDYE2Q495Y8 402 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 KCNT1Q5JUK3 1230 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 WDR60Q8WVS4 1066 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 TTC17Q96AE7 1141 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 TMEM143Q96AN5 459 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 FAM136AQ96C01 138 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 FAM111AQ96PZ2 611 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 VPS11Q9H270 941 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 KCNK13Q9HB14 408 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 CYP26B1Q9NR63 512 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 C3orf70A6NLC5 250 aaPredicted RBP17.18■□□□□ 0.34
SDC4-201ENST00000372733 CAPN9O14815 690 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 LPXNO60711 386 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 BGNP21810 368 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 TBXAS1P24557 533 aaPredicted RBP17.18■□□□□ 0.34
SDC4-201ENST00000372733 CDK16Q00536 496 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 GNPTABQ3T906 1256 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 PALM2Q8IXS6 379 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 SCYL3Q8IZE3 742 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 MCUR1Q96AQ8 359 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 NSL1Q96IY1 281 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 SERAC1Q96JX3 654 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 CGRRF1Q99675 332 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 TARS2Q9BW92 718 aaKnown RBP17.18■□□□□ 0.34
SDC4-201ENST00000372733 DLGAP2Q9P1A6 1054 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 FETUBQ9UGM5 382 aa17.18■□□□□ 0.34
SDC4-201ENST00000372733 MYH9P35579 1960 aaKnown RBP17.18■□□□□ 0.34
SDC4-201ENST00000372733 CST8O60676 142 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 RAD17O75943 681 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 EDN1P05305 212 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 SP100P23497 879 aaPredicted RBP17.17■□□□□ 0.34
SDC4-201ENST00000372733 RFC5P40937 340 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 RCN2Q14257 317 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 IGDCC3Q8IVU1 814 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 VPS52Q8N1B4 723 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 MSTO1Q9BUK6 570 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 DDX56Q9NY93 547 aaKnown RBP17.17■□□□□ 0.34
SDC4-201ENST00000372733 ARMCX1Q9P291 453 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 ABLIM1O14639 778 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 PLSCR1O15162 318 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 MT-ND3P03897 115 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 ASNSP08243 561 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 NEFHP12036 1026 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 RTP1P59025 263 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 SYCP2LQ5T4T6 812 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 GPAT2Q6NUI2 795 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 PCGF5Q86SE9 256 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 RDM1Q8NG50 284 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 ZBTB12Q9Y330 459 aaPredicted RBP17.17■□□□□ 0.34
SDC4-201ENST00000372733 WDR81Q562E7 1941 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 LRRIQ4A6NIV6 560 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 E7ESA3 106 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 WDR46O15213 610 aaKnown RBP17.17■□□□□ 0.34
SDC4-201ENST00000372733 TBX10O75333 385 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 PSMG1O95456 288 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 IL1R2P27930 398 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 CPA2P48052 419 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 PTK7Q13308 1070 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 EMC2Q15006 297 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 SGSM1Q2NKQ1 1148 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms