RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 STAP1Q9ULZ2 295 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 TMEM120BA0PK00 339 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 EIF2S1P05198 315 aaKnown RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 PTK7Q13308 1070 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 NFIXQ14938 502 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 AP5M1Q9H0R1 490 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 ZHX2Q9Y6X8 837 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 CYP26A1O43174 497 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 KLRC1P26715 233 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 OTUD4Q01804 1114 aaKnown RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 JPH1Q9HDC5 661 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 CAPN6Q9Y6Q1 641 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 CES2O00748 559 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 MMP10P09238 476 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 TNFRSF8P28908 595 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 HPCAP84074 193 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 FAM102AQ5T9C2 384 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 BBS7Q8IWZ6 715 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 CCNA1P78396 465 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 NAIF1Q69YI7 327 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 SNRNP48Q6IEG0 339 aaKnown RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 KLHL11Q9NVR0 708 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 DTNAQ9Y4J8 743 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 GPC3P51654 580 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 ATP1A4Q13733 1029 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 ITIH4Q14624 930 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 ANKRD49Q8WVL7 239 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 TRIM63Q969Q1 353 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 CAAP1Q9H8G2 361 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 SNUPNO95149 360 aaKnown RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 APRTP07741 180 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 HSMCR30P0CW71 290 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 PHKA2P46019 1235 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 KYNUQ16719 465 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 RIBC1Q8N443 379 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 RBM46Q8TBY0 533 aaKnown RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 ZSWIM1Q9BR11 485 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 IPPQ9Y573 584 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 KLHL18O94889 574 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 EIF3EP60228 445 aaKnown RBP10.26□□□□□ -0.77
COL6A3-201ENST00000295550 NME3Q13232 169 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 SEMA6BQ9H3T3 888 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 FAM205AQ6ZU69 1335 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 FAM196BA6NMK8 535 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 B2RBV5 119 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 PON1P27169 355 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 RAB42Q8N4Z0 105 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SNX31Q8N9S9 440 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 RGL1Q9NZL6 768 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 TFR2Q9UP52 801 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 TK2O00142 265 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 NMD3Q96D46 503 aaKnown RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 MOSPD1Q9UJG1 213 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SPAG17Q6Q759 2223 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 PIPSLA2A3N6 862 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 PSTPIP1O43586 416 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 C4orf33Q8N1A6 199 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 RAD21L1Q9H4I0 556 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 DBR1Q9UK59 544 aaKnown RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SNPHO15079 494 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 CENPAP49450 140 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SLC16A1P53985 500 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 LRRC8DQ7L1W4 858 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 CALML6Q8TD86 181 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ELMO2Q96JJ3 720 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 MAML3Q96JK9 1138 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 RBBP8Q99708 897 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 DHX35Q9H5Z1 703 aaKnown RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 FBXO40Q9UH90 709 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 KLHL20Q9Y2M5 609 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 KRT6BP04259 564 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 FDX1P10109 184 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 PPP3CCP48454 512 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 KRT6CP48668 564 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SLC10A5Q5PT55 438 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 BARGINQ6ZT62 677 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ARHGAP22Q7Z5H3 698 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SETD3Q86TU7 594 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 QKIQ96PU8 341 aaKnown RBP eCLIP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SERHL2Q9H4I8 314 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SERHLQ9NQF3 203 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF446Q9NWS9 450 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 CACNA2D2Q9NY47 1150 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 RBAKQ9NYW8 714 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 GABBR1Q9UBS5 961 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SGSM1Q2NKQ1 1148 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ARMC4Q5T2S8 1044 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SYCP2LQ5T4T6 812 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 RUSC1Q9BVN2 902 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ARHGEF38Q9NXL2 777 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ABCC6O95255 1503 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ZCCHC18P0CG32 403 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 NCALDP61601 193 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 MEI1Q5TIA1 1274 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 TTC39BQ5VTQ0 682 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 TTC30AQ86WT1 665 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF677Q86XU0 584 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms