RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C SGF11Q03067 99 aa9.7□□□□□ -0.86
SHU1YHL006C ATX2Q12067 313 aa9.7□□□□□ -0.86
SHU1YHL006C YOL085CQ99345 113 aa9.7□□□□□ -0.86
SHU1YHL006C AFR1P33304 620 aa9.69□□□□□ -0.86
SHU1YHL006C FMP41P53889 259 aaKnown RBP9.69□□□□□ -0.86
SHU1YHL006C SDO1Q07953 250 aaKnown RBP9.69□□□□□ -0.86
SHU1YHL006C TOM7P53507 60 aa9.68□□□□□ -0.86
SHU1YHL006C MRS1P07266 363 aa9.67□□□□□ -0.86
SHU1YHL006C RPS0AP32905 252 aaKnown RBP9.67□□□□□ -0.86
SHU1YHL006C HTB2P02294 131 aa9.66□□□□□ -0.86
SHU1YHL006C TY1A-BRQ12217 440 aa9.66□□□□□ -0.86
SHU1YHL006C ECM25P32525 599 aa9.65□□□□□ -0.86
SHU1YHL006C SPI1P40092 148 aa9.65□□□□□ -0.86
SHU1YHL006C EMC5P40540 141 aa9.65□□□□□ -0.86
SHU1YHL006C YJR096WP47137 282 aa9.65□□□□□ -0.86
SHU1YHL006C TMA23Q03525 211 aa9.65□□□□□ -0.86
SHU1YHL006C RAV2Q03956 351 aa9.65□□□□□ -0.86
SHU1YHL006C YLR125WQ12138 136 aa9.65□□□□□ -0.86
SHU1YHL006C ACP1P32463 125 aa9.64□□□□□ -0.87
SHU1YHL006C NNK1P36003 928 aa9.64□□□□□ -0.87
SHU1YHL006C VHS2P40463 436 aa9.64□□□□□ -0.87
SHU1YHL006C LOC1P43586 204 aaPredicted RBP9.64□□□□□ -0.87
SHU1YHL006C MRPL20P22354 195 aaPredicted RBP9.63□□□□□ -0.87
SHU1YHL006C RPL14AP36105 138 aaKnown RBP9.63□□□□□ -0.87
SHU1YHL006C RPL14BP38754 138 aaKnown RBP9.63□□□□□ -0.87
SHU1YHL006C YHR173CP38864 112 aa9.62□□□□□ -0.87
SHU1YHL006C YMR141CP40211 102 aa9.62□□□□□ -0.87
SHU1YHL006C RPR2P40571 144 aa9.62□□□□□ -0.87
SHU1YHL006C SMD3P43321 101 aaKnown RBP9.62□□□□□ -0.87
SHU1YHL006C YCL001W-AP87012 153 aa9.62□□□□□ -0.87
SHU1YHL006C VMA16P23968 213 aa9.61□□□□□ -0.87
SHU1YHL006C COX19Q3E731 98 aa9.61□□□□□ -0.87
SHU1YHL006C RNA15P25299 296 aaPredicted RBP9.6□□□□□ -0.87
SHU1YHL006C PHO23P50947 330 aa9.6□□□□□ -0.87
SHU1YHL006C SME1Q12330 94 aaPredicted RBP9.6□□□□□ -0.87
SHU1YHL006C TMA17Q12513 150 aa9.6□□□□□ -0.87
SHU1YHL006C VAR1P02381 398 aa9.59□□□□□ -0.87
SHU1YHL006C CPT1P17898 393 aa9.59□□□□□ -0.87
SHU1YHL006C SPC25P40014 221 aa9.59□□□□□ -0.87
SHU1YHL006C PLP1Q04004 230 aa9.59□□□□□ -0.87
SHU1YHL006C PAU4P53427 120 aa9.58□□□□□ -0.88
SHU1YHL006C RPL31BP0C2H9 113 aaKnown RBP9.57□□□□□ -0.88
SHU1YHL006C HMX1P32339 317 aa9.57□□□□□ -0.88
SHU1YHL006C YCR075W-AQ3E830 75 aa9.56□□□□□ -0.88
SHU1YHL006C YLR302CO13544 120 aa9.55□□□□□ -0.88
SHU1YHL006C MRPL4P36517 319 aa9.55□□□□□ -0.88
SHU1YHL006C YIL163CP40448 117 aa9.55□□□□□ -0.88
SHU1YHL006C DAD4P69851 72 aa9.54□□□□□ -0.88
SHU1YHL006C SNO1Q03144 224 aa9.54□□□□□ -0.88
SHU1YHL006C YBR298C-AQ8TGK4 73 aa9.54□□□□□ -0.88
SHU1YHL006C Q0255P03881 472 aa9.53□□□□□ -0.88
SHU1YHL006C YGL015CP33199 130 aa9.53□□□□□ -0.88
SHU1YHL006C PAU1P0CE88 120 aa9.52□□□□□ -0.89
SHU1YHL006C PAU14P0CE89 120 aa9.52□□□□□ -0.89
SHU1YHL006C PAU6P0CE90 120 aa9.52□□□□□ -0.89
SHU1YHL006C PAU18P0CE91 120 aa9.52□□□□□ -0.89
SHU1YHL006C PAU8P0CE92 120 aa9.52□□□□□ -0.89
SHU1YHL006C PAU11P0CE93 120 aa9.52□□□□□ -0.89
SHU1YHL006C AME1P38313 324 aa9.52□□□□□ -0.89
SHU1YHL006C PAU13P38725 120 aa9.52□□□□□ -0.89
SHU1YHL006C YPS5P53057 165 aa9.52□□□□□ -0.89
SHU1YHL006C PAU10Q03050 120 aa9.52□□□□□ -0.89
SHU1YHL006C YMR253CQ04835 414 aa9.52□□□□□ -0.89
SHU1YHL006C PAU20Q08322 120 aa9.52□□□□□ -0.89
SHU1YHL006C PAU9Q3E770 120 aa9.52□□□□□ -0.89
SHU1YHL006C YBR126W-AQ8TGU7 68 aa9.51□□□□□ -0.89
SHU1YHL006C SHG1P38337 142 aa9.5□□□□□ -0.89
SHU1YHL006C RRT13P40042 185 aa9.5□□□□□ -0.89
SHU1YHL006C YLR342W-AQ3E810 57 aa9.5□□□□□ -0.89
SHU1YHL006C RPP1AP05318 106 aaPredicted RBP9.49□□□□□ -0.89
SHU1YHL006C DAD1Q12248 94 aa9.49□□□□□ -0.89
SHU1YHL006C YPT10P38146 199 aa9.48□□□□□ -0.89
SHU1YHL006C KEG1P43614 200 aa9.48□□□□□ -0.89
SHU1YHL006C YBR090CP38253 122 aa9.47□□□□□ -0.89
SHU1YHL006C RPS22AP0C0W1 130 aaKnown RBP9.46□□□□□ -0.9
SHU1YHL006C RPL16BP26785 198 aaKnown RBP9.46□□□□□ -0.9
SHU1YHL006C MSK1P32048 576 aa9.46□□□□□ -0.9
SHU1YHL006C AGA1P32323 725 aa9.46□□□□□ -0.9
SHU1YHL006C RIB5P38145 238 aa9.46□□□□□ -0.9
SHU1YHL006C POG1P40473 351 aa9.46□□□□□ -0.9
SHU1YHL006C YDR366CP87287 132 aa9.46□□□□□ -0.9
SHU1YHL006C CYB5P40312 120 aa9.45□□□□□ -0.9
SHU1YHL006C GAT4P40569 121 aa9.45□□□□□ -0.9
SHU1YHL006C YPR195CQ06594 109 aa9.45□□□□□ -0.9
SHU1YHL006C FZF1P32805 299 aa9.44□□□□□ -0.9
SHU1YHL006C ELF1P36053 145 aa9.44□□□□□ -0.9
SHU1YHL006C YGL185CP53100 379 aa9.44□□□□□ -0.9
SHU1YHL006C BRP1P53194 125 aa9.44□□□□□ -0.9
SHU1YHL006C ATP23P53722 227 aa9.44□□□□□ -0.9
SHU1YHL006C YBR200W-AQ3E755 54 aa9.44□□□□□ -0.9
SHU1YHL006C YGR240C-AQ3E786 66 aa9.44□□□□□ -0.9
SHU1YHL006C YBR085C-AO43137 85 aa9.43□□□□□ -0.9
SHU1YHL006C SIT1P39980 628 aa9.43□□□□□ -0.9
SHU1YHL006C GIS2P53849 153 aaKnown RBP RIP-Chip data9.43□□□□□ -0.9not detected
SHU1YHL006C UTP23Q12339 254 aaKnown RBP9.43□□□□□ -0.9
SHU1YHL006C YCH1P42937 148 aa9.42□□□□□ -0.9
SHU1YHL006C SNN1P48232 102 aa9.42□□□□□ -0.9
SHU1YHL006C KRE9P39005 276 aa9.41□□□□□ -0.9
SHU1YHL006C IRC22P40006 225 aa9.41□□□□□ -0.9
SHU1YHL006C YFR045WP43617 309 aa9.41□□□□□ -0.9
Retrieved 100 of 5,963 RNA–protein pairs in 92.5 ms