RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 LRPAP1P30533 357 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 GBP1P32455 592 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 TXLNAP40222 546 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 DUSP4Q13115 394 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 STXBP5Q5T5C0 1151 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 RRAGBQ5VZM2 374 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 SLFN12LQ6IEE8 588 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 PKN3Q6P5Z2 889 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 USP49Q70CQ1 688 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 USP37Q86T82 979 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 COL26A1Q96A83 441 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 C18orf25Q96B23 403 aaPredicted RBP11.39□□□□□ -0.59
CPSF1-203ENST00000527916 HVCN1Q96D96 273 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 BICD1Q96G01 975 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 LRRC3BQ96PB8 259 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 PGLYRP2Q96PD5 576 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 GCNAQ96QF7 691 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 LRRC3Q9BY71 257 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 SEL1LQ9UBV2 794 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 ZMYM5Q9UJ78 669 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 PCDHB8Q9UN66 801 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 NEUROG3Q9Y4Z2 214 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 STYXL1Q9Y6J8 313 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 EML5Q05BV3 1969 aa11.39□□□□□ -0.59
CPSF1-203ENST00000527916 SMG1Q96Q15 3661 aaKnown RBP11.39□□□□□ -0.59
CPSF1-203ENST00000527916 NUP210Q8TEM1 1887 aaPredicted RBP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 KIF26AQ9ULI4 1882 aaPredicted RBP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 OR6C75A6NL08 312 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 K7ENM7 598 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 TRDMT1O14717 391 aaKnown RBP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 HNRNPDLO14979 420 aaKnown RBP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 RNF40O75150 1001 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 OAZ2O95190 189 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 APBB3O95704 486 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 CXCL8P10145 99 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 DRD1P21728 446 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 GABRR2P28476 465 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 RDXP35241 583 aaKnown RBP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 MATR3P43243 847 aaKnown RBP eCLIP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 FBXO43Q4G163 708 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 SEZ6Q53EL9 994 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 FSTL4Q6MZW2 842 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 FAM173BQ6P4H8 233 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 CCDC73Q6ZRK6 1079 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 GAREM2Q75VX8 874 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 SV2BQ7L1I2 683 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 ZNF720Q7Z2F6 126 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 DNAJB7Q7Z6W7 309 aaPredicted RBP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 PSMG2Q969U7 264 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 HHIPQ96QV1 700 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 USP28Q96RU2 1077 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 STRA6Q9BX79 667 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 DNAJC25Q9H1X3 360 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 ZHX3Q9H4I2 956 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 SLC32A1Q9H598 525 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 TASP1Q9H6P5 420 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 RPF1Q9H9Y2 349 aaKnown RBP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 GKN1Q9NS71 199 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 EBF1Q9UH73 591 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 CPSF3Q9UKF6 684 aaKnown RBP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 UBQLN1Q9UMX0 589 aaKnown RBP11.38□□□□□ -0.59
CPSF1-203ENST00000527916 ANK1P16157 1881 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 IGSF10Q6WRI0 2623 aa11.38□□□□□ -0.59
CPSF1-203ENST00000527916 LACTBL1A8MY62 500 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 M0QZQ0 153 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 PRAMEF12O95522 483 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 TOP3BO95985 862 aaKnown RBP11.37□□□□□ -0.59
CPSF1-203ENST00000527916 GAP43P17677 238 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 CDC25CP30307 473 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 NMT1P30419 496 aaKnown RBP11.37□□□□□ -0.59
CPSF1-203ENST00000527916 TNFSF9P41273 254 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 NASPP49321 788 aaPredicted RBP11.37□□□□□ -0.59
CPSF1-203ENST00000527916 AARSP49588 968 aaKnown RBP eCLIP11.37□□□□□ -0.59
CPSF1-203ENST00000527916 PPP2R3AQ06190 1150 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 GPR17Q13304 367 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 RUNX3Q13761 415 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 VEPH1Q14D04 833 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 POSTNQ15063 836 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 ENOX2Q16206 610 aaKnown RBP11.37□□□□□ -0.59
CPSF1-203ENST00000527916 UAP1L1Q3KQV9 507 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 USP39Q53GS9 565 aaKnown RBP11.37□□□□□ -0.59
CPSF1-203ENST00000527916 SLC39A4Q6P5W5 647 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 SYT13Q7L8C5 426 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 LINC00301Q8NCQ3 95 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 CCDC26Q8TAB7 109 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 ACDQ96AP0 544 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 DNAJC19Q96DA6 116 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 CLIC6Q96NY7 704 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 MKNK1Q9BUB5 465 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 ASB7Q9H672 318 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 DERAQ9Y315 318 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 MSRB2Q9Y3D2 182 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 ACACAQ13085 2346 aa11.37□□□□□ -0.59
CPSF1-203ENST00000527916 HELZ2Q9BYK8 2649 aaKnown RBP11.37□□□□□ -0.59
CPSF1-203ENST00000527916 THADAQ6YHU6 1953 aa11.36□□□□□ -0.59
CPSF1-203ENST00000527916 MYMKA6NI61 221 aa11.36□□□□□ -0.59
CPSF1-203ENST00000527916 TAF4O00268 1085 aa11.36□□□□□ -0.59
CPSF1-203ENST00000527916 DCLK1O15075 740 aa11.36□□□□□ -0.59
CPSF1-203ENST00000527916 PPP6R2O75170 966 aa11.36□□□□□ -0.59
CPSF1-203ENST00000527916 PPP1R37O75864 691 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms