RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 UBXN6Q9BZV1 441 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 PPRC1Q5VV67 1664 aaKnown RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 N4BP2Q86UW6 1770 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 TSPAN9O75954 239 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 NR3C1P04150 777 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 PTPN4P29074 926 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 KCTD21Q4G0X4 260 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 SLC45A4Q5BKX6 768 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 CYB5D1Q6P9G0 228 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 THNSL1Q8IYQ7 743 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 PPHLN1Q8NEY8 458 aaKnown RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 ASCC2Q9H1I8 757 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 ING4Q9UNL4 249 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 LAMA4Q16363 1823 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 E5RI56 91 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 PEX14O75381 377 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 FAM58BPP0C7Q3 252 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 AFF2P51816 1311 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 BCAR1P56945 870 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 KYQ8NBH2 561 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 SKA1Q96BD8 255 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 RNPC3Q96LT9 517 aaKnown RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 DESI2Q9BSY9 194 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 FTOQ9C0B1 505 aaKnown RBP eCLIP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 ADA2Q9NZK5 511 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 IGSF9BQ9UPX0 1349 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 SEC31AO94979 1220 aaKnown RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 CCND2P30279 289 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 ATP2C1P98194 919 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 TMEM44Q2T9K0 475 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 TMC5Q6UXY8 1006 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 STKLD1Q8NE28 680 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 SKA2Q8WVK7 121 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 UBE2E3Q969T4 207 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 CAMKK2Q96RR4 588 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 VPS45Q9NRW7 570 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 EMILIN3Q9NT22 766 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 ATPIF1Q9UII2 106 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 RNMTO43148 476 aaKnown RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 F9P00740 461 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 HIST1H2AGP0C0S8 130 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 VCLP18206 1134 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 MSH3P20585 1137 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 HIST1H2ADP20671 130 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 DCKP27707 260 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 OLFML1Q6UWY5 402 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 B3GNT6Q6ZMB0 384 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 HAUS6Q7Z4H7 955 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 FOXP4Q8IVH2 680 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 KRT78Q8N1N4 520 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 MREGQ8N565 214 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 RFT1Q96AA3 541 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 HIST1H2AHQ96KK5 128 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 ZFP42Q96MM3 310 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 HIST1H2AJQ99878 128 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 H2AFJQ9BTM1 129 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 TRMOQ9BU70 441 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 NOVA2Q9UNW9 492 aaKnown RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 CCDC154A6NI56 674 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 B4E1Z4 1266 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 KRT34O76011 436 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 MOCS3O95396 460 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 DPCR1Q3MIW9 517 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 THAP1Q9NVV9 213 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 KLHL8Q9P2G9 620 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 TRMT6Q9UJA5 497 aaKnown RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 CLTCQ00610 1675 aaKnown RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 NBASA2RRP1 2371 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 NWD1Q149M9 1564 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 PNPLA7Q6ZV29 1317 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 SNAP23O00161 211 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 MPZL2O60487 215 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 IFNAR2P48551 515 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 KCNK10P57789 538 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 ACTN3Q08043 901 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 NAB2Q15742 525 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 DUOXA2Q1HG44 320 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 NSUN7Q8NE18 718 aaKnown RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 KCNB2Q92953 911 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 CCDC189A1A4V9 331 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 DDI2Q5TDH0 399 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 NAA35Q5VZE5 725 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 USPL1Q5W0Q7 1092 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 KIAA0408Q6ZU52 694 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 H2AFY2Q9P0M6 372 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-204ENST00000455883 ANAPC7Q9UJX3 599 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 PRR12Q9ULL5 1215 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 HIVEP3Q5T1R4 2406 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 CDHR2Q9BYE9 1310 aa5.42□□□□□ -1.54
CSMD3-204ENST00000455883 UBXN8O00124 270 aa5.41□□□□□ -1.54
CSMD3-204ENST00000455883 IFRD1O00458 451 aaPredicted RBP5.41□□□□□ -1.54
CSMD3-204ENST00000455883 PPIBP23284 216 aaKnown RBP5.41□□□□□ -1.54
CSMD3-204ENST00000455883 SOX5P35711 763 aa5.41□□□□□ -1.54
CSMD3-204ENST00000455883 TRIP13Q15645 432 aaPredicted RBP5.41□□□□□ -1.54
CSMD3-204ENST00000455883 KNOP1Q1ED39 458 aaKnown RBP5.41□□□□□ -1.54
CSMD3-204ENST00000455883 NYAP1Q6ZVC0 841 aa5.41□□□□□ -1.54
CSMD3-204ENST00000455883 DEPDC4Q8N2C3 294 aa5.41□□□□□ -1.54
CSMD3-204ENST00000455883 DDX17Q92841 729 aaKnown RBP5.41□□□□□ -1.54
CSMD3-204ENST00000455883 C12orf66Q96MD2 445 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms