RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 RNF19AQ9NV58 838 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 RBPJLQ9UBG7 517 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 SH3BP1Q9Y3L3 701 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 LOC102724159A0A0B4J2E5 919 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 TARSL2A2RTX5 802 aaKnown RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 HMGB1P1B2RPK0 211 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 KRT38O76015 456 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 MMP3P08254 477 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ACAT1P24752 427 aaKnown RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 NCKAP1LP55160 1127 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ASPHQ12797 758 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 PWP2Q15269 919 aaKnown RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 CLEC16AQ2KHT3 1053 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 KLHL38Q2WGJ6 581 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 CHSY1Q86X52 802 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 PPM1NQ8N819 430 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 FBXO32Q969P5 355 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 LACRTQ9GZZ8 138 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 CATSPERBQ9H7T0 1116 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 CNOT10Q9H9A5 744 aaKnown RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 LRRC10BA6NIK2 292 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 APRTP07741 180 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 MNAT1P51948 309 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 IRX4P78413 519 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 NFE2Q16621 373 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 HIF1AQ16665 826 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 USP33Q8TEY7 942 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ARHGEF26Q96DR7 871 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 CDT1Q9H211 546 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 RNPEPQ9H4A4 650 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 WDCPQ9H6R7 721 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 RAB6BQ9NRW1 208 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 HES2Q9Y543 173 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 CAPN6Q9Y6Q1 641 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 WDR91A4D1P6 747 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 KPNA7A9QM74 516 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ATP9BO43861 1147 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 HMGCRP04035 888 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ICAM3P32942 547 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 PAPOLAP51003 745 aaKnown RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 BST2Q10589 180 aaKnown RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 MAPK8IP2Q13387 824 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 MKRN4PQ13434 485 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 NPY5RQ15761 445 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 NBPF20Q3BBV1 942 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 TAF1BQ53T94 588 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 SH3D19Q5HYK7 790 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 SYCP2LQ5T4T6 812 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 IL31Q6EBC2 164 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 DNAAF5Q86Y56 855 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ATP11CQ8NB49 1132 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 COG1Q8WTW3 980 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 BRI3BPQ8WY22 251 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 RMDN1Q96DB5 314 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 PABPC5Q96DU9 382 aaKnown RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 CARD9Q9H257 536 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 TSPAN16Q9UKR8 245 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 C10orf71Q711Q0 1435 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 A0A087WUV0 522 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 F8W8V4 182 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 RBP3P10745 1247 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 RPL10AP62906 217 aaKnown RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 P3H1Q32P28 736 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 KDELC2Q7Z4H8 507 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 TTC30AQ86WT1 665 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ARHGAP24Q8N264 748 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 USP38Q8NB14 1042 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 CD99L2Q8TCZ2 262 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ASIC4Q96FT7 647 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ZSWIM1Q9BR11 485 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 OSGEPQ9NPF4 335 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ENTPD7Q9NQZ7 604 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 RASA4BC9J798 803 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 MAPK13O15264 365 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 RASA4O43374 803 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 GPC4O75487 556 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 EPHB2P29323 1055 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 KCNJ1P48048 391 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 HIRAP54198 1017 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 VSNL1P62760 191 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 PRAMEP78395 509 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 BTG3Q14201 252 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-213ENST00000448038 PDK1Q15118 436 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 ANO4Q32M45 955 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 KLC3Q6P597 504 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 NYAP1Q6ZVC0 841 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 SLC9A9Q8IVB4 645 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 PKNOX2Q96KN3 472 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 DUOX1Q9NRD9 1551 aa7.76□□□□□ -1.17
SYNE1-213ENST00000448038 CFAP69A5D8W1 941 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 PHF20L1A8MW92 1017 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SETSIPP0DME0 302 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 DNAJB2P25686 324 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SESN2P58004 480 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 PCBP1Q15365 356 aaKnown RBP eCLIP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SMAD1Q15797 465 aaKnown RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 FAM171A1Q5VUB5 890 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 OR6P1Q8NGX9 317 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 GIMAP7Q8NHV1 300 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms