RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 ARHGEF2Q92974 986 aaKnown RBP12.59□□□□□ -0.39
PTPRN-204ENST00000423636 ZMAT2Q96NC0 199 aaKnown RBP12.59□□□□□ -0.39
PTPRN-204ENST00000423636 RBM15Q96T37 977 aaKnown RBP eCLIP12.59□□□□□ -0.39
PTPRN-204ENST00000423636 ERAP1Q9NZ08 941 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 LTBP3Q9NS15 1303 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 GMNCA6NCL1 334 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 TMEM191CA6NGB0 347 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 E5RJQ4 531 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 PECAM1P16284 738 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 CYP2B6P20813 491 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 IVDP26440 423 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 RAD23BP54727 409 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 RTP1P59025 263 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 MXD4Q14582 209 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 PAN2Q504Q3 1202 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 FAM133BQ5BKY9 247 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 EXOC3L1Q86VI1 746 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 RFX6Q8HWS3 928 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 WDR49Q8IV35 697 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 OTUD6BQ8N6M0 293 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 RNF169Q8NCN4 708 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 KAT2BQ92831 832 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 ART4Q93070 314 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 LBHD1Q9BQE6 289 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 RASSF4Q9H2L5 321 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 NXF3Q9H4D5 531 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 GINM1Q9NU53 330 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 INTS9Q9NV88 658 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 GJD2Q9UKL4 321 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 TIMM13Q9Y5L4 95 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 MEIS3P2A8K0S8 358 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 PODXLO00592 558 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 MICAL2O94851 1124 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 CYP3A5P20815 502 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 ACAT1P24752 427 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 SSTR1P30872 391 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 SKOR1P84550 965 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 MTMR3Q13615 1198 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 BYSLQ13895 437 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 ZC3H12AQ5D1E8 599 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 KCTD6Q8NC69 237 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 GPRC5AQ8NFJ5 357 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 ACTL9Q8TC94 416 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 BRI3BPQ8WY22 251 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 SLITRK1Q96PX8 696 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 MRPL45Q9BRJ2 306 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 ADAM7Q9H2U9 754 aa12.58□□□□□ -0.4
PTPRN-204ENST00000423636 MRPL47Q9HD33 250 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 RANBP2P49792 3224 aaKnown RBP12.58□□□□□ -0.4
PTPRN-204ENST00000423636 H0YCG3 227 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 SNAI1O95863 264 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-204ENST00000423636 GAS8O95995 478 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 AFF1P51825 1210 aaKnown RBP12.57□□□□□ -0.4
PTPRN-204ENST00000423636 SNRPFP62306 86 aaKnown RBP12.57□□□□□ -0.4
PTPRN-204ENST00000423636 BASP1P80723 227 aaKnown RBP12.57□□□□□ -0.4
PTPRN-204ENST00000423636 OTUD4Q01804 1114 aaKnown RBP12.57□□□□□ -0.4
PTPRN-204ENST00000423636 HIC1Q14526 733 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 PLEKHA7Q6IQ23 1121 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 TAPT1Q6NXT6 567 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 ILDR2Q71H61 639 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 CCDC125Q86Z20 511 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 FMNL3Q8IVF7 1028 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 NPLOC4Q8TAT6 608 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 SEC14L1Q92503 715 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 SNF8Q96H20 258 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 CABS1Q96KC9 395 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 TXLNGYQ9BZA5 131 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 PDZD7Q9H5P4 517 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 NINJ2Q9NZG7 142 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 USP34Q70CQ2 3546 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 LRCH4O75427 683 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 TBXAS1P24557 533 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-204ENST00000423636 YARSP54577 528 aaKnown RBP12.57□□□□□ -0.4
PTPRN-204ENST00000423636 CLDN10P78369 228 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 MCL1Q07820 350 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 SPOCD1Q6ZMY3 1216 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 ENOSF1Q7L5Y1 443 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 SLC4A11Q8NBS3 891 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 OR6B3Q8NGW1 331 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 ATL2Q8NHH9 583 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 DNAJB3Q8WWF6 145 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 PTPN18Q99952 460 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 SCN1AP35498 2009 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 TMEM120BA0PK00 339 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 CTSHP09668 335 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 TGFB3P10600 412 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 LCP1P13796 627 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 CCDC130P13994 396 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 EFNA5P52803 228 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 TRNP1Q6NT89 227 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 ARMC9Q7Z3E5 817 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 UNC45BQ8IWX7 931 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 TMEM134Q9H6X4 195 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 LRRC19Q9H756 370 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 FGFR1OP2Q9NVK5 253 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 PARP2Q9UGN5 583 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 CEP83Q9Y592 693 aa12.57□□□□□ -0.4
PTPRN-204ENST00000423636 KIAA0754O94854 1291 aa12.56□□□□□ -0.4
PTPRN-204ENST00000423636 LMO2P25791 158 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms