RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W DAD3P69850 94 aa3.63□□□□□ -1.83
PRP40YKL012W RDI1Q12434 202 aa3.63□□□□□ -1.83
PRP40YKL012W RIF1P29539 1916 aa3.63□□□□□ -1.83
PRP40YKL012W CPA1P07258 411 aaKnown RBP3.63□□□□□ -1.83
PRP40YKL012W AVT2P39981 480 aa3.63□□□□□ -1.83
PRP40YKL012W LAA1P39526 2014 aa3.63□□□□□ -1.83
PRP40YKL012W MOT1P32333 1867 aa3.62□□□□□ -1.83
PRP40YKL012W SCL1P21243 252 aaKnown RBP3.62□□□□□ -1.83
PRP40YKL012W BUD23P25627 275 aaPredicted RBP3.62□□□□□ -1.83
PRP40YKL012W UTP11P34247 250 aaPredicted RBP3.62□□□□□ -1.83
PRP40YKL012W FIG1P38224 298 aa3.62□□□□□ -1.83
PRP40YKL012W GPI14P47088 403 aaKnown RBP3.62□□□□□ -1.83
PRP40YKL012W YGL235WP53071 178 aa3.62□□□□□ -1.83
PRP40YKL012W BOL2P53082 120 aa3.62□□□□□ -1.83
PRP40YKL012W YAR023CD6VPM8 179 aa3.61□□□□□ -1.83
PRP40YKL012W YBR032WP38223 100 aa3.61□□□□□ -1.83
PRP40YKL012W YNR077CP53758 84 aa3.61□□□□□ -1.83
PRP40YKL012W HSK3P69852 69 aa3.61□□□□□ -1.83
PRP40YKL012W NAT3Q06504 195 aa3.61□□□□□ -1.83
PRP40YKL012W YOR342CQ12182 319 aa3.61□□□□□ -1.83
PRP40YKL012W VMA22P38784 181 aa3.61□□□□□ -1.83
PRP40YKL012W NSG1P38837 291 aa3.61□□□□□ -1.83
PRP40YKL012W EDC3P39998 551 aaKnown RBP3.61□□□□□ -1.83
PRP40YKL012W RFC2P40348 353 aa3.61□□□□□ -1.83
PRP40YKL012W TMA20P89886 181 aaPredicted RBP3.61□□□□□ -1.83
PRP40YKL012W NSL1Q12143 216 aa3.61□□□□□ -1.83
PRP40YKL012W TOM1Q03280 3268 aa3.6□□□□□ -1.83
PRP40YKL012W SHE2P36068 246 aaKnown RBP RIP-Chip data3.6□□□□□ -1.83not detected
PRP40YKL012W DER1P38307 211 aa3.6□□□□□ -1.83
PRP40YKL012W VTC1P40046 129 aaRIP-Chip data3.6□□□□□ -1.83not detected
PRP40YKL012W YFL019CP43576 117 aa3.6□□□□□ -1.83
PRP40YKL012W CGI121Q03705 181 aaKnown RBP3.6□□□□□ -1.83
PRP40YKL012W UIP4Q08926 304 aa3.6□□□□□ -1.83
PRP40YKL012W POR1P04840 283 aaKnown RBP3.59□□□□□ -1.83
PRP40YKL012W VMA10P48836 114 aaKnown RBP3.59□□□□□ -1.83
PRP40YKL012W COA4Q05809 96 aa3.59□□□□□ -1.83
PRP40YKL012W DGK1Q12382 290 aa3.59□□□□□ -1.83
PRP40YKL012W YLR412C-AQ3E742 68 aa3.59□□□□□ -1.83
PRP40YKL012W RPS28BP0C0X0 67 aaKnown RBP3.58□□□□□ -1.84
PRP40YKL012W SVP26P38869 228 aa3.58□□□□□ -1.84
PRP40YKL012W FCY21P40039 528 aa3.58□□□□□ -1.84
PRP40YKL012W YNL217WP40152 326 aa3.58□□□□□ -1.84
PRP40YKL012W YJL027CP47063 138 aaPredicted RBP3.58□□□□□ -1.84
PRP40YKL012W YMR099CQ03161 297 aaKnown RBP3.58□□□□□ -1.84
PRP40YKL012W RPS28AQ3E7X9 67 aaPredicted RBP3.58□□□□□ -1.84
PRP40YKL012W ECM29P38737 1868 aa3.58□□□□□ -1.84
PRP40YKL012W SPO13P23624 291 aa3.58□□□□□ -1.84
PRP40YKL012W YBR242WP38331 238 aa3.58□□□□□ -1.84
PRP40YKL012W MPC3P53311 146 aa3.58□□□□□ -1.84
PRP40YKL012W YDR476CQ03362 224 aa3.58□□□□□ -1.84
PRP40YKL012W FMN1Q03778 218 aa3.58□□□□□ -1.84
PRP40YKL012W TIM8P57744 87 aa3.57□□□□□ -1.84
PRP40YKL012W PDX3P38075 228 aaKnown RBP3.56□□□□□ -1.84
PRP40YKL012W SOL1P50278 321 aa3.56□□□□□ -1.84
PRP40YKL012W RPL22BP56628 122 aaKnown RBP3.56□□□□□ -1.84
PRP40YKL012W VPS71Q03433 280 aa3.56□□□□□ -1.84
PRP40YKL012W MAK3Q03503 176 aa3.56□□□□□ -1.84
PRP40YKL012W YPR202WQ08993 238 aa3.56□□□□□ -1.84
PRP40YKL012W YDL180WQ12301 547 aa3.56□□□□□ -1.84
PRP40YKL012W ATG40Q99325 256 aa3.56□□□□□ -1.84
PRP40YKL012W RAS2P01120 322 aaKnown RBP3.56□□□□□ -1.84
PRP40YKL012W YHR022CP38763 256 aa3.56□□□□□ -1.84
PRP40YKL012W TTI2P47168 421 aa3.56□□□□□ -1.84
PRP40YKL012W ERG25P53045 309 aa3.56□□□□□ -1.84
PRP40YKL012W DML1Q03652 475 aa3.56□□□□□ -1.84
PRP40YKL012W UBR2Q07963 1872 aa3.55□□□□□ -1.84
PRP40YKL012W HSP30P25619 332 aa3.55□□□□□ -1.84
PRP40YKL012W MPA43P53583 542 aaPredicted RBP3.55□□□□□ -1.84
PRP40YKL012W RGM1Q00453 211 aa3.55□□□□□ -1.84
PRP40YKL012W YCR023CP25351 611 aa3.54□□□□□ -1.84
PRP40YKL012W DAN1P47178 298 aa3.54□□□□□ -1.84
PRP40YKL012W SBH2P52871 88 aa3.54□□□□□ -1.84
PRP40YKL012W CYT2Q00873 224 aa3.54□□□□□ -1.84
PRP40YKL012W PET20Q99373 253 aa3.54□□□□□ -1.84
PRP40YKL012W DDI2P0CH63 225 aa3.53□□□□□ -1.84
PRP40YKL012W DDI3P0CH64 225 aa3.53□□□□□ -1.84
PRP40YKL012W ALB1P47019 175 aaPredicted RBP3.53□□□□□ -1.84
PRP40YKL012W YMR295CQ03559 197 aa3.53□□□□□ -1.84
PRP40YKL012W TIR1P10863 254 aa3.53□□□□□ -1.84
PRP40YKL012W NMT1P14743 455 aa3.53□□□□□ -1.84
PRP40YKL012W ETR1P38071 380 aa3.53□□□□□ -1.84
PRP40YKL012W AGE2P40529 298 aa3.53□□□□□ -1.84
PRP40YKL012W ERJ5P43613 295 aaPredicted RBP3.53□□□□□ -1.84
PRP40YKL012W XPT1P47165 209 aa3.53□□□□□ -1.84
PRP40YKL012W TFC1P32367 649 aa3.52□□□□□ -1.85
PRP40YKL012W YBR209WP38311 105 aa3.52□□□□□ -1.85
PRP40YKL012W EFG1Q3E705 233 aaKnown RBP3.52□□□□□ -1.85
PRP40YKL012W YLR236CA0A023PZG4 107 aa3.51□□□□□ -1.85
PRP40YKL012W SEN2P16658 377 aa3.51□□□□□ -1.85
PRP40YKL012W SHH3Q04487 196 aa3.51□□□□□ -1.85
PRP40YKL012W SPC2Q04969 178 aa3.51□□□□□ -1.85
PRP40YKL012W NSP1P14907 823 aaKnown RBP3.51□□□□□ -1.85
PRP40YKL012W FZF1P32805 299 aa3.51□□□□□ -1.85
PRP40YKL012W YFR054CP43622 192 aa3.51□□□□□ -1.85
PRP40YKL012W YGL101WP53144 215 aa3.51□□□□□ -1.85
PRP40YKL012W YPR127WQ06494 345 aa3.51□□□□□ -1.85
PRP40YKL012W DIE2P50076 525 aa3.5□□□□□ -1.85
PRP40YKL012W THI74Q04083 370 aa3.5□□□□□ -1.85
PRP40YKL012W YMR321CQ04898 105 aa3.5□□□□□ -1.85
PRP40YKL012W STF2P16965 84 aa3.49□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 22.9 ms