RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 EMSYQ7Z589 1322 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 C2CD2LO14523 706 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 ENPP3O14638 875 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 CLOCKO15516 846 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 TSPAN9O75954 239 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 SEC24DO94855 1032 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 COL6A1P12109 1028 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 RXRAP19793 462 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 ANXA13P27216 316 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 PMLP29590 882 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 HNRNPFP52597 415 aaKnown RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 NR1H2P55055 460 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 ACTR3P61158 418 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 RPL26P61254 145 aaKnown RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 TUBA3CQ13748 450 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 NFIXQ14938 502 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 STK11Q15831 433 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 RILPL1Q5EBL4 403 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 ITPRIPL1Q6GPH6 555 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 RNF111Q6ZNA4 994 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 SYNE4Q8N205 404 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 MARVELD2Q8N4S9 558 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 Q8N9G6 341 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 HELQQ8TDG4 1101 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 HPS1Q92902 700 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 KAZALD1Q96I82 304 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 NUF2Q9BZD4 464 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 ROPN1BQ9BZX4 212 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 ROPN1Q9HAT0 212 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 C12orf10Q9HB07 376 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 C12orf4Q9NQ89 552 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 RABGEF1Q9UJ41 708 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 AGO2Q9UKV8 859 aaKnown RBP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 SNX24Q9Y343 169 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.93□□□□□ -0.82
CLIP1-214ENST00000540539 NR2E1Q9Y466 385 aa9.93□□□□□ -0.82
CLIP1-214ENST00000540539 EDF1O60869 148 aaKnown RBP9.92□□□□□ -0.82
CLIP1-214ENST00000540539 NTSR2O95665 410 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 P4HA1P13674 534 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 CTRB1P17538 263 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 NR4A1P22736 598 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 IST1P53990 364 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 ANTXR2P58335 489 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 XIAPP98170 497 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 IL9RQ01113 521 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 KRT76Q01546 638 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 TRMT5Q32P41 509 aaKnown RBP9.92□□□□□ -0.82
CLIP1-214ENST00000540539 Q3C1V9 767 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 HGSNATQ68CP4 663 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 CTRB2Q6GPI1 263 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 RWDD4Q6NW29 188 aaKnown RBP9.92□□□□□ -0.82
CLIP1-214ENST00000540539 CYP2U1Q7Z449 544 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 ADGRG6Q86SQ4 1221 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 SLC51BQ86UW2 128 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 BRSK2Q8IWQ3 736 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 HACE1Q8IYU2 909 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 NSL1Q96IY1 281 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 PACSIN1Q9BY11 444 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 KLHL25Q9H0H3 589 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 ZNF696Q9H7X3 374 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 COL24A1Q17RW2 1714 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 DDX60Q8IY21 1712 aaKnown RBP9.92□□□□□ -0.82
CLIP1-214ENST00000540539 SSU72P8A0A1W2PR75 194 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 HSPD1P10809 573 aaKnown RBP9.92□□□□□ -0.82
CLIP1-214ENST00000540539 RARBP10826 455 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 BTDP43251 543 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 MYBPC1Q00872 1141 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 DR1Q01658 176 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 TDRD12Q587J7 1177 aaKnown RBP9.92□□□□□ -0.82
CLIP1-214ENST00000540539 CEP78Q5JTW2 689 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 TMCO4Q5TGY1 634 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 TTI2Q6NXR4 508 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 LPCAT2Q7L5N7 544 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 DIS3L2Q8IYB7 885 aaKnown RBP9.92□□□□□ -0.82
CLIP1-214ENST00000540539 NLGN1Q8N2Q7 840 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 NPLOC4Q8TAT6 608 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 DDI1Q8WTU0 396 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 BAP1Q92560 729 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 GLG1Q92896 1179 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 TAMM41Q96BW9 452 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 PRR11Q96HE9 360 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-214ENST00000540539 SERPINB12Q96P63 405 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 MKNK1Q9BUB5 465 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 PDGFDQ9GZP0 370 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-214ENST00000540539 OLFML3Q9NRN5 406 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 GRHL1Q9NZI5 618 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 TMOD2Q9NZR1 351 aa9.92□□□□□ -0.82
CLIP1-214ENST00000540539 WDR91A4D1P6 747 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 KIAA0391O15091 583 aaKnown RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 SGTAO43765 313 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 SIN3BO75182 1162 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 RPN1P04843 607 aaKnown RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 PCP11498 1178 aaKnown RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CXCR2P25025 360 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 ATP5DP30049 168 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 TM4SF1P30408 202 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 STAT2P52630 851 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 ZNF135P52742 658 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 NCKAP1LP55160 1127 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 B2MP61769 119 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms