RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ATRIPQ8WXE1 791 aa3.31□□□□□ -1.88
SKA3-207ENST00000536239 TMX3Q96JJ7 454 aa3.31□□□□□ -1.88
SKA3-207ENST00000536239 ASB2Q96Q27 587 aa3.31□□□□□ -1.88
SKA3-207ENST00000536239 PPP1R10Q96QC0 940 aaKnown RBP3.31□□□□□ -1.88
SKA3-207ENST00000536239 DNAJC28Q9NX36 388 aa3.31□□□□□ -1.88
SKA3-207ENST00000536239 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.31□□□□□ -1.88
SKA3-207ENST00000536239 ERVV-2B6SEH9 535 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 E9PLN8 166 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 QSOX1O00391 747 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 POLRMTO00411 1230 aaKnown RBP3.3□□□□□ -1.88
SKA3-207ENST00000536239 ALPLP05186 524 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 TMEM191BP0C7N4 346 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 OSMP13725 252 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 LPOP22079 712 aaPredicted RBP3.3□□□□□ -1.88
SKA3-207ENST00000536239 SCP2P22307 547 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 GPR3P46089 330 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 EEFSECP57772 596 aaKnown RBP3.3□□□□□ -1.88
SKA3-207ENST00000536239 HTRA4P83105 476 aaPredicted RBP3.3□□□□□ -1.88
SKA3-207ENST00000536239 HOXA4Q00056 320 aaPredicted RBP3.3□□□□□ -1.88
SKA3-207ENST00000536239 TARDBPQ13148 414 aaKnown RBP eCLIP3.3□□□□□ -1.88
SKA3-207ENST00000536239 WDR53Q7Z5U6 358 aaPredicted RBP3.3□□□□□ -1.88
SKA3-207ENST00000536239 RSPH3Q86UC2 560 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 AOPEPQ8N6M6 819 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 C16orf52Q8NHV5 167 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 KLHDC4Q8TBB5 520 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 FAM136AQ96C01 138 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 COQ8BQ96D53 544 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 ZC3H10Q96K80 434 aaKnown RBP3.3□□□□□ -1.88
SKA3-207ENST00000536239 VKORC1Q9BQB6 163 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 VTA1Q9NP79 307 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 DLL3Q9NYJ7 618 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 MAPRE3Q9UPY8 281 aa3.3□□□□□ -1.88
SKA3-207ENST00000536239 APOBEC2Q9Y235 224 aaKnown RBP3.3□□□□□ -1.88
SKA3-207ENST00000536239 PDE8AO60658 829 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 OAZ2O95190 189 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 ANXA1P04083 346 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 CYP2C18P33260 490 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 NANOS2P60321 138 aaKnown RBP3.29□□□□□ -1.88
SKA3-207ENST00000536239 HYAL1Q12794 435 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 ERV3-1Q14264 604 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 PCID2Q5JVF3 399 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 RBM20Q5T481 1227 aaKnown RBP3.29□□□□□ -1.88
SKA3-207ENST00000536239 ZNF618Q5T7W0 954 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 TEDDM1Q5T9Z0 273 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 SHC4Q6S5L8 630 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 USP43Q70EL4 1123 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 FAM109AQ8N4B1 249 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 RBMXL3Q8N7X1 1067 aaKnown RBP3.29□□□□□ -1.88
SKA3-207ENST00000536239 IFI44Q8TCB0 444 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 NRG4Q8WWG1 115 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 RAB24Q969Q5 203 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 LYZL4Q96KX0 146 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 NELL2Q99435 816 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 SMOC2Q9H3U7 446 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 TDP1Q9NUW8 608 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 INTUQ9ULD6 942 aa3.29□□□□□ -1.88
SKA3-207ENST00000536239 CD8B2A6NJW9 211 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 SOAT2O75908 522 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 KRT10P13645 584 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 ATP5F1P24539 256 aaPredicted RBP3.28□□□□□ -1.88
SKA3-207ENST00000536239 WASP42768 502 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 ZNF280AP59817 542 aaPredicted RBP3.28□□□□□ -1.88
SKA3-207ENST00000536239 CYP4F2P78329 520 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 CDC42EP1Q00587 391 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 NAPRTQ6XQN6 538 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 Q6ZTC4 211 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 NPM2Q86SE8 214 aaKnown RBP3.28□□□□□ -1.88
SKA3-207ENST00000536239 SERHLQ9NQF3 203 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 CCM2LQ9NUG4 571 aaPredicted RBP3.28□□□□□ -1.88
SKA3-207ENST00000536239 ETAA1Q9NY74 926 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 KLHL13Q9P2N7 655 aa3.28□□□□□ -1.88
SKA3-207ENST00000536239 LY6G6EA0A0G2JKS1 128 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 FCHO1O14526 889 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 PDHA1P08559 390 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 MYCLP1P12525 358 aaPredicted RBP3.27□□□□□ -1.89
SKA3-207ENST00000536239 IL1R2P27930 398 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 CD6P30203 668 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 SEMA3AQ14563 771 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 RBMS2Q15434 407 aaKnown RBP3.27□□□□□ -1.89
SKA3-207ENST00000536239 CCDC144BQ3MJ40 725 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 TAF2Q6P1X5 1199 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 DDX46Q7L014 1031 aaKnown RBP3.27□□□□□ -1.89
SKA3-207ENST00000536239 RNF180Q86T96 592 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 DTX2Q86UW9 622 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 PSD4Q8NDX1 1056 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 CYP2W1Q8TAV3 490 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 SCAMP4Q969E2 229 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 RITA1Q96K30 269 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 SLC2A13Q96QE2 648 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 MACROD1Q9BQ69 325 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 DUSP22Q9NRW4 184 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 C14orf119Q9NWQ9 140 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 NISCHQ9Y2I1 1504 aa3.27□□□□□ -1.89
SKA3-207ENST00000536239 A0A0U1RQG5 324 aaPredicted RBP3.26□□□□□ -1.89
SKA3-207ENST00000536239 FAM90A8PA6NJQ4 464 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 PRSS44E7EML9 344 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 PPM1DO15297 605 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 FAM90A13PP0C7W8 464 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 FAM90A24PP0C7X0 464 aa3.26□□□□□ -1.89
SKA3-207ENST00000536239 PRF1P14222 555 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms