RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 AEBP2Q6ZN18 517 aaPredicted RBP21.77■■□□□ 1.08
SKA3-207ENST00000536239 CHIC1Q5VXU3 224 aa20.51■□□□□ 0.87
SKA3-207ENST00000536239 SENP3Q9H4L4 574 aaPredicted RBP18.59■□□□□ 0.57
SKA3-207ENST00000536239 PHF23Q9BUL5 403 aaPredicted RBP18.34■□□□□ 0.53
SKA3-207ENST00000536239 FOXD1Q16676 465 aa17.36■□□□□ 0.37
SKA3-207ENST00000536239 PLPPR3Q6T4P5 718 aa16.31■□□□□ 0.2
SKA3-207ENST00000536239 MSH5O43196 834 aa16.3■□□□□ 0.2
SKA3-207ENST00000536239 POTEDQ86YR6 584 aa16.21■□□□□ 0.19
SKA3-207ENST00000536239 PIAS4Q8N2W9 510 aaPredicted RBP16.16■□□□□ 0.18
SKA3-207ENST00000536239 PPP6R1Q9UPN7 881 aa16.1■□□□□ 0.17
SKA3-207ENST00000536239 ADRA2BP18089 450 aa16.04■□□□□ 0.16
SKA3-207ENST00000536239 MAPK8IP2Q13387 824 aaPredicted RBP14.79□□□□□ -0.04
SKA3-207ENST00000536239 DMRT2Q9Y5R5 561 aa14.72□□□□□ -0.05
SKA3-207ENST00000536239 SCAF1Q9H7N4 1312 aaKnown RBP14.68□□□□□ -0.06
SKA3-207ENST00000536239 PPP4R3CPQ6ZMV5 832 aa14.28□□□□□ -0.12
SKA3-207ENST00000536239 DCAF8L1A6NGE4 600 aa14.12□□□□□ -0.15
SKA3-207ENST00000536239 HOXD11P31277 338 aaPredicted RBP14.12□□□□□ -0.15
SKA3-207ENST00000536239 CACNB1Q02641 598 aaPredicted RBP14.09□□□□□ -0.15
SKA3-207ENST00000536239 CNKSR2Q8WXI2 1034 aa14.05□□□□□ -0.16
SKA3-207ENST00000536239 RNF216Q9NWF9 866 aaPredicted RBP13.97□□□□□ -0.17
SKA3-207ENST00000536239 RNF39Q9H2S5 420 aa13.89□□□□□ -0.19
SKA3-207ENST00000536239 C1QBPQ07021 282 aaKnown RBP13.69□□□□□ -0.22
SKA3-207ENST00000536239 NCBP3Q53F19 620 aaKnown RBP13.68□□□□□ -0.22
SKA3-207ENST00000536239 DNAJC5BQ9UF47 199 aa13.67□□□□□ -0.22
SKA3-207ENST00000536239 NPM3O75607 178 aaKnown RBP13.48□□□□□ -0.25
SKA3-207ENST00000536239 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.44□□□□□ -0.269e-6■■■□□ 18.9
SKA3-207ENST00000536239 U3KPZ7 1027 aaPredicted RBP13.14□□□□□ -0.31
SKA3-207ENST00000536239 KCNA4P22459 653 aa13.06□□□□□ -0.32
SKA3-207ENST00000536239 SPINK5Q9NQ38 1064 aaPredicted RBP13□□□□□ -0.33
SKA3-207ENST00000536239 CAPN15O75808 1086 aa12.99□□□□□ -0.33
SKA3-207ENST00000536239 DSG3P32926 999 aa12.96□□□□□ -0.33
SKA3-207ENST00000536239 SLC4A2P04920 1241 aa12.92□□□□□ -0.34
SKA3-207ENST00000536239 APLP2Q06481 763 aa12.76□□□□□ -0.37
SKA3-207ENST00000536239 TRHP20396 242 aaPredicted RBP12.74□□□□□ -0.37
SKA3-207ENST00000536239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.71□□□□□ -0.37
SKA3-207ENST00000536239 HNRNPUL2Q1KMD3 747 aaKnown RBP12.71□□□□□ -0.37
SKA3-207ENST00000536239 ZNF219Q9P2Y4 722 aaPredicted RBP12.71□□□□□ -0.37
SKA3-207ENST00000536239 ABCB7O75027 752 aa12.66□□□□□ -0.38
SKA3-207ENST00000536239 POTEHQ6S545 545 aa12.66□□□□□ -0.38
SKA3-207ENST00000536239 SAMD1Q6SPF0 538 aaPredicted RBP12.63□□□□□ -0.39
SKA3-207ENST00000536239 MYCNP04198 464 aaPredicted RBP12.46□□□□□ -0.41
SKA3-207ENST00000536239 POLA2Q14181 598 aa12.37□□□□□ -0.43
SKA3-207ENST00000536239 RBM42Q9BTD8 480 aaKnown RBP12.36□□□□□ -0.43
SKA3-207ENST00000536239 SLC4A1APQ9BWU0 796 aaKnown RBP12.3□□□□□ -0.44
SKA3-207ENST00000536239 FOXD4L1Q9NU39 408 aa12.24□□□□□ -0.45
SKA3-207ENST00000536239 ATF5Q9Y2D1 282 aaPredicted RBP12.2□□□□□ -0.46
SKA3-207ENST00000536239 CHRDL2Q6WN34 429 aa12.16□□□□□ -0.46
SKA3-207ENST00000536239 ZBTB12Q9Y330 459 aaPredicted RBP12.09□□□□□ -0.47
SKA3-207ENST00000536239 AKT1S1Q96B36 256 aa12.05□□□□□ -0.48
SKA3-207ENST00000536239 ZBTB22O15209 634 aa12□□□□□ -0.49
SKA3-207ENST00000536239 OSCARQ8IYS5 282 aa11.96□□□□□ -0.49
SKA3-207ENST00000536239 REM2Q8IYK8 340 aaPredicted RBP11.94□□□□□ -0.5
SKA3-207ENST00000536239 ATXN8OSP0DMR3 200 aa11.89□□□□□ -0.51
SKA3-207ENST00000536239 PIP4P2Q8N4L2 257 aa11.84□□□□□ -0.51
SKA3-207ENST00000536239 PITPNM1O00562 1244 aa11.8□□□□□ -0.52
SKA3-207ENST00000536239 SP7Q8TDD2 431 aaPredicted RBP11.79□□□□□ -0.52
SKA3-207ENST00000536239 FXR2P51116 673 aaKnown RBP eCLIP11.75□□□□□ -0.53
SKA3-207ENST00000536239 FBLN2P98095 1184 aa11.73□□□□□ -0.53
SKA3-207ENST00000536239 SPDYE2BA6NHP3 402 aa11.71□□□□□ -0.53
SKA3-207ENST00000536239 SPDYE6P0CI01 402 aa11.71□□□□□ -0.53
SKA3-207ENST00000536239 SPDYE2Q495Y8 402 aa11.71□□□□□ -0.53
SKA3-207ENST00000536239 HAX1O00165 279 aa11.67□□□□□ -0.54
SKA3-207ENST00000536239 MKRN4PQ13434 485 aaPredicted RBP11.62□□□□□ -0.55
SKA3-207ENST00000536239 SPDYE1Q8NFV5 336 aaPredicted RBP11.55□□□□□ -0.56
SKA3-207ENST00000536239 ZNF692Q9BU19 519 aaPredicted RBP11.55□□□□□ -0.56
SKA3-207ENST00000536239 CLEC11AQ9Y240 323 aa11.54□□□□□ -0.56
SKA3-207ENST00000536239 SSUH2Q9Y2M2 353 aa11.53□□□□□ -0.56
SKA3-207ENST00000536239 EVX2Q03828 476 aa11.52□□□□□ -0.57
SKA3-207ENST00000536239 PRKAR2AP13861 404 aaKnown RBP11.5□□□□□ -0.57
SKA3-207ENST00000536239 C19orf67A6NJJ6 358 aa11.38□□□□□ -0.59
SKA3-207ENST00000536239 PABPN1Q86U42 306 aaKnown RBP eCLIP11.37□□□□□ -0.59
SKA3-207ENST00000536239 CHADLQ6NUI6 762 aa11.34□□□□□ -0.59
SKA3-207ENST00000536239 PRR29P0C7W0 189 aa11.33□□□□□ -0.6
SKA3-207ENST00000536239 CSRNP3Q8WYN3 585 aa11.31□□□□□ -0.6
SKA3-207ENST00000536239 GABBR2O75899 941 aa11.26□□□□□ -0.61
SKA3-207ENST00000536239 FARP1Q9Y4F1 1045 aaPredicted RBP11.15□□□□□ -0.62
SKA3-207ENST00000536239 CD44P16070 742 aaKnown RBP11.12□□□□□ -0.63
SKA3-207ENST00000536239 LHX8Q68G74 356 aa11.06□□□□□ -0.64
SKA3-207ENST00000536239 EHMT2Q96KQ7 1210 aa11.05□□□□□ -0.64
SKA3-207ENST00000536239 CLCN6P51797 869 aa11.03□□□□□ -0.64
SKA3-207ENST00000536239 STAG3Q9UJ98 1225 aa11.03□□□□□ -0.64
SKA3-207ENST00000536239 POTEIP0CG38 1075 aa11.01□□□□□ -0.65
SKA3-207ENST00000536239 CREBZFQ9NS37 354 aa11.01□□□□□ -0.65
SKA3-207ENST00000536239 SPDYE4A6NLX3 237 aa10.99□□□□□ -0.65
SKA3-207ENST00000536239 ZRANB1Q9UGI0 708 aa10.95□□□□□ -0.66
SKA3-207ENST00000536239 ZNF579Q8NAF0 562 aaKnown RBP10.94□□□□□ -0.66
SKA3-207ENST00000536239 DCBLD2Q96PD2 775 aa10.91□□□□□ -0.66
SKA3-207ENST00000536239 GALR2O43603 387 aaPredicted RBP10.83□□□□□ -0.68
SKA3-207ENST00000536239 PAK3O75914 559 aaPredicted RBP10.82□□□□□ -0.68
SKA3-207ENST00000536239 NPM1P06748 294 aaKnown RBP eCLIP10.8□□□□□ -0.68
SKA3-207ENST00000536239 MNX1P50219 401 aaPredicted RBP10.8□□□□□ -0.68
SKA3-207ENST00000536239 PHF12Q96QT6 1004 aa10.76□□□□□ -0.69
SKA3-207ENST00000536239 PROM2Q8N271 834 aa10.7□□□□□ -0.7
SKA3-207ENST00000536239 POTEB2H3BUK9 544 aa10.65□□□□□ -0.7
SKA3-207ENST00000536239 PELP1Q8IZL8 1130 aaKnown RBP10.64□□□□□ -0.71
SKA3-207ENST00000536239 OTUD5Q96G74 571 aa10.64□□□□□ -0.71
SKA3-207ENST00000536239 MS4A3Q96HJ5 214 aa10.62□□□□□ -0.71
SKA3-207ENST00000536239 TSPYL2Q9H2G4 693 aaPredicted RBP10.6□□□□□ -0.71
SKA3-207ENST00000536239 ASTLQ6HA08 431 aaPredicted RBP10.59□□□□□ -0.71
SKA3-207ENST00000536239 ATMINO43313 823 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms