RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C YOR015WQ12169 119 aa1.23□□□□□ -2.21
RUB1YDR139C ACC1Q00955 2233 aaKnown RBP1.23□□□□□ -2.21
RUB1YDR139C STP22P25604 385 aa1.22□□□□□ -2.21
RUB1YDR139C SHG1P38337 142 aa1.22□□□□□ -2.21
RUB1YDR139C FMP32P43557 207 aa1.22□□□□□ -2.21
RUB1YDR139C MET31Q03081 177 aa1.22□□□□□ -2.21
RUB1YDR139C PIR1Q03178 341 aa1.22□□□□□ -2.21
RUB1YDR139C YDR391CQ04170 232 aa1.22□□□□□ -2.21
RUB1YDR139C GRX8Q05926 109 aa1.22□□□□□ -2.21
RUB1YDR139C DAS2Q12084 232 aa1.22□□□□□ -2.21
RUB1YDR139C MPD1Q12404 318 aaKnown RBP1.22□□□□□ -2.21
RUB1YDR139C STF2P16965 84 aa1.21□□□□□ -2.22
RUB1YDR139C MRPL15P36523 253 aa1.21□□□□□ -2.22
RUB1YDR139C SBH1P52870 82 aa1.21□□□□□ -2.22
RUB1YDR139C ATP20Q12233 115 aa1.21□□□□□ -2.22
RUB1YDR139C SLH1P53327 1967 aaKnown RBP1.2□□□□□ -2.22
RUB1YDR139C YER188C-AP0C0V2 99 aa1.2□□□□□ -2.22
RUB1YDR139C APA2P22108 325 aa1.2□□□□□ -2.22
RUB1YDR139C AHC2P25649 128 aa1.2□□□□□ -2.22
RUB1YDR139C UBC8P28263 218 aa1.2□□□□□ -2.22
RUB1YDR139C HOP2P53187 214 aa1.2□□□□□ -2.22
RUB1YDR139C GRX5Q02784 150 aa1.2□□□□□ -2.22
RUB1YDR139C FYV12Q08559 129 aa1.2□□□□□ -2.22
RUB1YDR139C SEN2P16658 377 aa1.19□□□□□ -2.22
RUB1YDR139C GRX3Q03835 250 aa1.19□□□□□ -2.22
RUB1YDR139C SHH4Q06236 168 aa1.19□□□□□ -2.22
RUB1YDR139C YET3Q07451 203 aa1.19□□□□□ -2.22
RUB1YDR139C PST2Q12335 198 aaKnown RBP1.19□□□□□ -2.22
RUB1YDR139C DGK1Q12382 290 aa1.19□□□□□ -2.22
RUB1YDR139C MAK5P38112 773 aaPredicted RBP1.18□□□□□ -2.22
RUB1YDR139C RRT1P38192 103 aa1.18□□□□□ -2.22
RUB1YDR139C YBR242WP38331 238 aa1.18□□□□□ -2.22
RUB1YDR139C NSE4P43124 402 aa1.18□□□□□ -2.22
RUB1YDR139C YGL235WP53071 178 aa1.18□□□□□ -2.22
RUB1YDR139C AIM36Q03798 255 aa1.18□□□□□ -2.22
RUB1YDR139C GAL83Q04739 417 aa1.18□□□□□ -2.22
RUB1YDR139C BRX1Q08235 291 aaKnown RBP1.18□□□□□ -2.22
RUB1YDR139C TAR1Q8TGM6 124 aa1.18□□□□□ -2.22
RUB1YDR139C YBL010CP32788 280 aa1.17□□□□□ -2.22
RUB1YDR139C YKL102CP34249 101 aa1.17□□□□□ -2.22
RUB1YDR139C MPM1P40364 252 aa1.17□□□□□ -2.22
RUB1YDR139C SNO1Q03144 224 aa1.17□□□□□ -2.22
RUB1YDR139C LCL2Q08045 131 aa1.17□□□□□ -2.22
RUB1YDR139C YPR203WQ08994 102 aa1.17□□□□□ -2.22
RUB1YDR139C AHT1P29589 182 aa1.16□□□□□ -2.22
RUB1YDR139C SBH2P52871 88 aa1.16□□□□□ -2.22
RUB1YDR139C DML1Q03652 475 aa1.16□□□□□ -2.22
RUB1YDR139C GPI17Q04080 534 aa1.16□□□□□ -2.22
RUB1YDR139C YHP1Q04116 353 aa1.16□□□□□ -2.22
RUB1YDR139C UPS1Q05776 175 aa1.16□□□□□ -2.22
RUB1YDR139C YMR030W-AQ3E760 96 aa1.16□□□□□ -2.22
RUB1YDR139C YLR422WQ06409 1932 aa1.15□□□□□ -2.22
RUB1YDR139C GCY1P14065 312 aaKnown RBP RIP-Chip data1.15□□□□□ -2.23not detected
RUB1YDR139C SEC14P24280 304 aaKnown RBP1.15□□□□□ -2.23
RUB1YDR139C HSP30P25619 332 aa1.15□□□□□ -2.23
RUB1YDR139C RFC2P40348 353 aa1.15□□□□□ -2.23
RUB1YDR139C VPS28Q02767 242 aa1.15□□□□□ -2.23
RUB1YDR139C HPT1Q04178 221 aaKnown RBP1.15□□□□□ -2.23
RUB1YDR139C ATG41Q12048 136 aa1.15□□□□□ -2.23
RUB1YDR139C MAK31P23059 88 aa1.14□□□□□ -2.23
RUB1YDR139C ATP7P30902 174 aa1.14□□□□□ -2.23
RUB1YDR139C YKR041WP36134 250 aa1.14□□□□□ -2.23
RUB1YDR139C ETR1P38071 380 aa1.14□□□□□ -2.23
RUB1YDR139C NVJ1P38881 321 aa1.14□□□□□ -2.23
RUB1YDR139C GIM3P53900 129 aa1.14□□□□□ -2.23
RUB1YDR139C YHL037CP38733 133 aa1.13□□□□□ -2.23
RUB1YDR139C YPR127WQ06494 345 aa1.13□□□□□ -2.23
RUB1YDR139C CLG1P35190 452 aa1.12□□□□□ -2.23
RUB1YDR139C YRA2P36036 203 aaKnown RBP RIP-Chip data1.12□□□□□ -2.23not detected
RUB1YDR139C FYV4P38783 130 aaPredicted RBP1.12□□□□□ -2.23
RUB1YDR139C CCS1P40202 249 aaKnown RBP1.12□□□□□ -2.23
RUB1YDR139C HHT1P61830 136 aa1.12□□□□□ -2.23
RUB1YDR139C YKR005CQ02203 525 aa1.12□□□□□ -2.23
RUB1YDR139C FIT1Q04433 528 aa1.12□□□□□ -2.23
RUB1YDR139C ELP6Q04868 273 aa1.12□□□□□ -2.23
RUB1YDR139C YOR214CQ12282 236 aa1.12□□□□□ -2.23
RUB1YDR139C YOR381W-AQ3E804 55 aa1.12□□□□□ -2.23
RUB1YDR139C DUR1,2P32528 1835 aaKnown RBP1.11□□□□□ -2.23
RUB1YDR139C YFL051CP43552 160 aa1.11□□□□□ -2.23
RUB1YDR139C TTI2P47168 421 aa1.11□□□□□ -2.23
RUB1YDR139C TIM13P53299 105 aa1.11□□□□□ -2.23
RUB1YDR139C RIM9Q04734 239 aa1.11□□□□□ -2.23
RUB1YDR139C TRR1P29509 319 aaKnown RBP1.1□□□□□ -2.23
RUB1YDR139C YNL200CP40165 246 aaKnown RBP1.1□□□□□ -2.23
RUB1YDR139C POG1P40473 351 aa1.1□□□□□ -2.23
RUB1YDR139C JAC1P53193 184 aa1.1□□□□□ -2.23
RUB1YDR139C CPR5P35176 225 aa1.09□□□□□ -2.23
RUB1YDR139C SEC72P39742 193 aaKnown RBP1.09□□□□□ -2.23
RUB1YDR139C UGX2P32772 223 aa1.08□□□□□ -2.24
RUB1YDR139C DCV1P43595 202 aa1.08□□□□□ -2.24
RUB1YDR139C XPT1P47165 209 aa1.08□□□□□ -2.24
RUB1YDR139C SOL1P50278 321 aa1.08□□□□□ -2.24
RUB1YDR139C PEX11Q12462 236 aa1.08□□□□□ -2.24
RUB1YDR139C RAD6P06104 172 aa1.07□□□□□ -2.24
RUB1YDR139C YAR064WP39563 99 aa1.07□□□□□ -2.24
RUB1YDR139C MOB1P40484 314 aa1.07□□□□□ -2.24
RUB1YDR139C YIL102CP40488 101 aa1.07□□□□□ -2.24
RUB1YDR139C NUF2P33895 451 aa1.06□□□□□ -2.24
RUB1YDR139C GLR1P41921 483 aaKnown RBP1.06□□□□□ -2.24
RUB1YDR139C GRE1Q08969 168 aa1.06□□□□□ -2.24
Retrieved 100 of 5,963 RNA–protein pairs in 29.2 ms