RNA–Protein interactions for RNA: YDL139C

SCM3, Transcript of Nonhistone component of centromeric chromatin, yeast

Gene SCM3, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SCM3	YDL139C	ATO3	Q12359	275 aa		4.13	□□□□□ -1.75
SCM3	YDL139C	AIM45	Q12480	344 aa	Known RBP	4.13	□□□□□ -1.75
SCM3	YDL139C	PCC1	Q3E833	88 aa		4.13	□□□□□ -1.75
SCM3	YDL139C	ISN1	Q99312	450 aa		4.13	□□□□□ -1.75
SCM3	YDL139C	GDH1	P07262	454 aa	Known RBP	4.12	□□□□□ -1.75
SCM3	YDL139C	RPL35A	P0CX84	120 aa	Known RBP	4.12	□□□□□ -1.75
SCM3	YDL139C	RPL35B	P0CX85	120 aa	Known RBP	4.12	□□□□□ -1.75
SCM3	YDL139C	ERV1	P27882	189 aa		4.12	□□□□□ -1.75
SCM3	YDL139C	RPL14A	P36105	138 aa	Known RBP	4.12	□□□□□ -1.75
SCM3	YDL139C	SHB17	P36136	271 aa	Known RBP	4.12	□□□□□ -1.75
SCM3	YDL139C	NAT2	P37293	288 aa		4.12	□□□□□ -1.75
SCM3	YDL139C	ERV15	P38312	142 aa		4.12	□□□□□ -1.75
SCM3	YDL139C	RPL14B	P38754	138 aa	Known RBP	4.12	□□□□□ -1.75
SCM3	YDL139C	EMC5	P40540	141 aa		4.12	□□□□□ -1.75
SCM3	YDL139C	YGR050C	P53231	118 aa		4.12	□□□□□ -1.75
SCM3	YDL139C	SUR7	P54003	302 aa		4.12	□□□□□ -1.75
SCM3	YDL139C	YMR254C	Q04838	102 aa		4.12	□□□□□ -1.75
SCM3	YDL139C	YFH1	Q07540	174 aa		4.12	□□□□□ -1.75
SCM3	YDL139C	YHR213W-A	Q8TGT4	77 aa		4.12	□□□□□ -1.75
SCM3	YDL139C	SOD1	P00445	154 aa	Known RBP	4.11	□□□□□ -1.75
SCM3	YDL139C	SPO13	P23624	291 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	UPS2	P35200	230 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	ECM31	P38122	312 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	YBR013C	P38215	129 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	IKI1	P38874	309 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	YEA4	P40004	342 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	YIL012W	P40551	113 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	BNS1	P50084	137 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	AVO2	Q04749	426 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	FSH2	Q05015	223 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	SDO1	Q07953	250 aa	Known RBP	4.11	□□□□□ -1.75
SCM3	YDL139C	IRC23	Q08416	157 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	YOS1	Q3E834	85 aa		4.11	□□□□□ -1.75
SCM3	YDL139C	YMR316C-A	I2HB70	103 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	RPS23A	P0CX29	145 aa	Known RBP	4.1	□□□□□ -1.75
SCM3	YDL139C	RPS23B	P0CX30	145 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	MSK1	P32048	576 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	RPS0A	P32905	252 aa	Known RBP	4.1	□□□□□ -1.75
SCM3	YDL139C	YUH1	P35127	236 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	WSS1	P38838	269 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	NSE4	P43124	402 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	YGR026W	P53217	278 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	CAF40	P53829	373 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	UPS1	Q05776	175 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	CTR3	Q06686	241 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	ERV2	Q12284	196 aa		4.1	□□□□□ -1.75
SCM3	YDL139C	FCY2	P17064	533 aa		4.09	□□□□□ -1.75
SCM3	YDL139C	YCR101C	P25607	182 aa		4.09	□□□□□ -1.75
SCM3	YDL139C	YBL059W	P34224	193 aa		4.09	□□□□□ -1.75
SCM3	YDL139C	ADH5	P38113	351 aa	Known RBP	4.09	□□□□□ -1.75
SCM3	YDL139C	SLM6	P38343	150 aa		4.09	□□□□□ -1.75
SCM3	YDL139C	GLE2	P40066	365 aa		4.09	□□□□□ -1.75
SCM3	YDL139C	COX15	P40086	486 aa		4.09	□□□□□ -1.75
SCM3	YDL139C	DUG3	P53871	357 aa		4.09	□□□□□ -1.75
SCM3	YDL139C	MCH1	Q07376	486 aa		4.09	□□□□□ -1.75
SCM3	YDL139C	RAX2	Q12465	1220 aa		4.09	□□□□□ -1.75
SCM3	YDL139C	ZRC1	P20107	442 aa		4.08	□□□□□ -1.76
SCM3	YDL139C	RPS2	P25443	254 aa	Known RBP	4.08	□□□□□ -1.76
SCM3	YDL139C	PRM5	P40476	318 aa		4.08	□□□□□ -1.76
SCM3	YDL139C	NCA3	P46955	337 aa		4.08	□□□□□ -1.76
SCM3	YDL139C	HIT1	P46973	164 aa		4.08	□□□□□ -1.76
SCM3	YDL139C	HAM1	P47119	197 aa	Known RBP	4.08	□□□□□ -1.76
SCM3	YDL139C	YGR025W	P53216	100 aa		4.08	□□□□□ -1.76
SCM3	YDL139C	GIM3	P53900	129 aa		4.08	□□□□□ -1.76
SCM3	YDL139C	YCL001W-A	P87012	153 aa		4.08	□□□□□ -1.76
SCM3	YDL139C	FRQ1	Q06389	190 aa		4.08	□□□□□ -1.76
SCM3	YDL139C	RAD28	Q12021	506 aa		4.08	□□□□□ -1.76
SCM3	YDL139C	FCF2	Q12035	217 aa	Predicted RBP	4.08	□□□□□ -1.76
SCM3	YDL139C	RPL43A	P0CX25	92 aa	Known RBP	4.07	□□□□□ -1.76
SCM3	YDL139C	RPL43B	P0CX26	92 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	RPB3	P16370	318 aa	Known RBP	4.07	□□□□□ -1.76
SCM3	YDL139C	SPS18	P32572	300 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	CPR5	P35176	225 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	ATP3	P38077	311 aa	Known RBP	4.07	□□□□□ -1.76
SCM3	YDL139C	AVT5	P38176	459 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	YIL163C	P40448	117 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	RTS2	P40962	232 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	VMA21	P41806	77 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	YJR015W	P47090	510 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	DAN1	P47178	298 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	MEH1	Q02205	184 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	MRPS17	Q03246	237 aa	Predicted RBP	4.07	□□□□□ -1.76
SCM3	YDL139C	TMA23	Q03525	211 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	YML108W	Q03759	105 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	YMR090W	Q04304	227 aa	Known RBP	4.07	□□□□□ -1.76
SCM3	YDL139C	GEP3	Q08622	556 aa		4.07	□□□□□ -1.76
SCM3	YDL139C	URA2	P07259	2214 aa	Known RBP	4.07	□□□□□ -1.76
SCM3	YDL139C	RPS25B	P0C0T4	108 aa	Known RBP	4.06	□□□□□ -1.76
SCM3	YDL139C	NOP1	P15646	327 aa	Known RBP	4.06	□□□□□ -1.76
SCM3	YDL139C	ATP10	P18496	279 aa		4.06	□□□□□ -1.76
SCM3	YDL139C	VMA11	P32842	164 aa		4.06	□□□□□ -1.76
SCM3	YDL139C	CMC1	P36064	111 aa		4.06	□□□□□ -1.76
SCM3	YDL139C	ATG8	P38182	117 aa	RIP-Chip data	4.06	□□□□□ -1.76	not detected
SCM3	YDL139C	TRS20	P38334	175 aa		4.06	□□□□□ -1.76
SCM3	YDL139C	YER121W	P40076	114 aa		4.06	□□□□□ -1.76
SCM3	YDL139C	LOC1	P43586	204 aa	Predicted RBP	4.06	□□□□□ -1.76
SCM3	YDL139C	YJL118W	P47022	219 aa		4.06	□□□□□ -1.76
SCM3	YDL139C	DSK2	P48510	373 aa		4.06	□□□□□ -1.76
SCM3	YDL139C	YGR018C	P53211	109 aa		4.06	□□□□□ -1.76
SCM3	YDL139C	PDR17	P53844	350 aa		4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms