RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 CMTR2Q8IYT2 770 aaKnown RBP16.25■□□□□ 0.19
TRIM28-209ENST00000597423 ADGRF2Q8IZF7 708 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 THEM5Q8N1Q8 247 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 PHOSPHO2Q8TCD6 241 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 SDCBP2Q9H190 292 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 NRDE2Q9H7Z3 1164 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 PPP2R2CQ9Y2T4 447 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 CEP83Q9Y592 693 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 PCDHA13Q9Y5I0 950 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 ANK1P16157 1881 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 TANC1Q9C0D5 1861 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 CD19P15391 556 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 TYMPP19971 482 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 RAD23BP54727 409 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 GFPT1Q06210 699 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-209ENST00000597423 ZNF394Q53GI3 561 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 SPOUT1Q5T280 376 aaKnown RBP16.24■□□□□ 0.19
TRIM28-209ENST00000597423 ALKBH5Q6P6C2 394 aaKnown RBP16.24■□□□□ 0.19
TRIM28-209ENST00000597423 TOGARAM2Q6ZUX3 1019 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 CCAR2Q8N163 923 aaKnown RBP16.24■□□□□ 0.19
TRIM28-209ENST00000597423 TMEM130Q8N3G9 435 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 PDCL2Q8N4E4 241 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 ZNF606Q8WXB4 792 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 HERVK_113Q902F9 699 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 SUSD3Q96L08 255 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 MRPL45Q9BRJ2 306 aaKnown RBP16.24■□□□□ 0.19
TRIM28-209ENST00000597423 ZBED2Q9BTP6 218 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 TSGA10Q9BZW7 698 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 SPTLC3Q9NUV7 552 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 NAGPAQ9UK23 515 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 NOCTQ9UK39 431 aaKnown RBP16.24■□□□□ 0.19
TRIM28-209ENST00000597423 PCDHB8Q9UN66 801 aa16.24■□□□□ 0.19
TRIM28-209ENST00000597423 A0A087X0T9 212 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 M0QZQ0 153 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 DDX3XO00571 662 aaKnown RBP eCLIP16.23■□□□□ 0.19
TRIM28-209ENST00000597423 NRP1O14786 923 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 FAM228BP0C875 321 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 PCSK1P29120 753 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 KIF5AQ12840 1032 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 BTG3Q14201 252 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-209ENST00000597423 TIGD5Q53EQ6 642 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 SGO2Q562F6 1265 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 TMEM240Q5SV17 173 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 TAF3Q5VWG9 929 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 C16orf59Q7L2K0 433 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 GLYCTKQ8IVS8 523 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 CRYBG2Q8N1P7 616 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 SLC4A11Q8NBS3 891 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 SLC30A5Q8TAD4 765 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 YME1L1Q96TA2 773 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 ZNF518BQ9C0D4 1074 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 ELOVL4Q9GZR5 314 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 AAASQ9NRG9 546 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.23■□□□□ 0.19
TRIM28-209ENST00000597423 INTUQ9ULD6 942 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 L1RE1Q9UN81 338 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 STXBP5LQ9Y2K9 1186 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 SLC4A7Q9Y6M7 1214 aa16.23■□□□□ 0.19
TRIM28-209ENST00000597423 GABRDO14764 452 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 RTN2O75298 545 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 CAPN15O75808 1086 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 LSM8O95777 96 aaKnown RBP16.22■□□□□ 0.19
TRIM28-209ENST00000597423 CYP11A1P05108 521 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 GALTP07902 379 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 MMEP08473 750 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 H2AFZP0C0S5 128 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 SYN1P17600 705 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 GATMP50440 423 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 DEFB103AP81534 67 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 CYP27A1Q02318 531 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 CNGA2Q16280 664 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 PAN2Q504Q3 1202 aaKnown RBP16.22■□□□□ 0.19
TRIM28-209ENST00000597423 WSCD1Q658N2 575 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 ZNF662Q6ZS27 426 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 H2AFVQ71UI9 128 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 TNS4Q8IZW8 715 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 TMEM35BQ8NCS4 154 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 WHAMMQ8TF30 809 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 SLC20A1Q8WUM9 679 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 DDX1Q92499 740 aaKnown RBP16.22■□□□□ 0.19
TRIM28-209ENST00000597423 RABGGTAQ92696 567 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 ZNF689Q96CS4 500 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-209ENST00000597423 SLC9A7Q96T83 725 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 PAAF1Q9BRP4 392 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 DESI2Q9BSY9 194 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 SYT11Q9BT88 431 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 TRMT1Q9NXH9 659 aaKnown RBP16.22■□□□□ 0.19
TRIM28-209ENST00000597423 STK39Q9UEW8 545 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 ADAM28Q9UKQ2 775 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 ZMYND8Q9ULU4 1186 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-209ENST00000597423 PCDHGC3Q9UN70 934 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 PRG3Q9Y2Y8 225 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-209ENST00000597423 INSL6Q9Y581 213 aa16.22■□□□□ 0.19
TRIM28-209ENST00000597423 TTC3P53804 2025 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 SYN3O14994 580 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 KRT86O43790 486 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 TUBB4AP04350 444 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 PDGFRBP09619 1106 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 CHRNB2P17787 502 aa16.21■□□□□ 0.19
TRIM28-209ENST00000597423 LAG3P18627 525 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms