RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 SIK3Q9Y2K2 1263 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 NPTX2P47972 431 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 ERVK-9P63128 1117 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 KIAA1841Q6NSI8 718 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 ATG4CQ96DT6 458 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 DCCP43146 1447 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 B2RBV5 119 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 CYTH3O43739 400 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 MOCS2O96007 188 aaPredicted RBP16.08■□□□□ 0.16
CIITA-204ENST00000570546 STMN1P16949 149 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 KLC1Q07866 573 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 TMTC4Q5T4D3 741 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 THTPAQ9BU02 230 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 NT5C1AQ9BXI3 368 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 ZC3H11AO75152 810 aaKnown RBP eCLIP16.07■□□□□ 0.16
CIITA-204ENST00000570546 LRRC71Q8N4P6 559 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 APPL2Q8NEU8 664 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 STAMBPL1Q96FJ0 436 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 EPAS1Q99814 870 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 SP110Q9HB58 689 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 EML4Q9HC35 981 aaKnown RBP16.07■□□□□ 0.16
CIITA-204ENST00000570546 PRAMEP78395 509 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 IER5Q5VY09 327 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 E2F7Q96AV8 911 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 SLC4A7Q9Y6M7 1214 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 PPHLN1Q8NEY8 458 aaKnown RBP16.07■□□□□ 0.16
CIITA-204ENST00000570546 TMC2Q8TDI7 906 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 NCLNQ969V3 563 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 DDX20Q9UHI6 824 aaKnown RBP16.07■□□□□ 0.16
CIITA-204ENST00000570546 BCL9O00512 1426 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 RNF103-CHMP3A0A140T963 221 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 NEMP1O14524 444 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 KLHL2O95198 593 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 SHMT1P34896 483 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 CHI3L2Q15782 390 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 GOLGA7BQ2TAP0 167 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 LRRC8EQ6NSJ5 796 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 TMC3Q7Z5M5 1100 aa16.07■□□□□ 0.16
CIITA-204ENST00000570546 ZC3H15Q8WU90 426 aaKnown RBP16.07■□□□□ 0.16
CIITA-204ENST00000570546 KCNMA1Q12791 1236 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 MYBPC2Q14324 1141 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 CLEC16AQ2KHT3 1053 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 PRPF39Q86UA1 669 aaKnown RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 CATSPER1Q8NEC5 780 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 MED15Q96RN5 788 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 SCAF8Q9UPN6 1271 aaKnown RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 VIRMAQ69YN4 1812 aaKnown RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 SPDYE2BA6NHP3 402 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 SPDYE6P0CI01 402 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 ZNF844Q08AG5 666 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 TMEM154Q6P9G4 183 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 FOXR1Q6PIV2 292 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 OR6P1Q8NGX9 317 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 CDC26Q8NHZ8 85 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 MTMR9Q96QG7 549 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.06■□□□□ 0.16
CIITA-204ENST00000570546 FAM49BQ9NUQ9 324 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 DDTLA6NHG4 134 aaPredicted RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 RRM1P23921 792 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 IL17AQ16552 155 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 SEZ6Q53EL9 994 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 CNPY4Q8N129 248 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 TSEN2Q8NCE0 465 aaKnown RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 TAS1R2Q8TE23 839 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 FRMD8P1Q9BZ68 369 aaPredicted RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 CNOT7Q9UIV1 285 aaKnown RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 PIN4Q9Y237 131 aaKnown RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 COL5A2P05997 1499 aaPredicted RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 OVGP1Q12889 678 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 RBM46Q8TBY0 533 aaKnown RBP16.06■□□□□ 0.16
CIITA-204ENST00000570546 SUFUQ9UMX1 484 aa16.06■□□□□ 0.16
CIITA-204ENST00000570546 AP3B1O00203 1094 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 O00370 1275 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 EEF2KO00418 725 aaKnown RBP16.05■□□□□ 0.16
CIITA-204ENST00000570546 PDGFRBP09619 1106 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 GARTP22102 1010 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 CYP24A1Q07973 514 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 PDCD2Q16342 344 aaPredicted RBP16.05■□□□□ 0.16
CIITA-204ENST00000570546 LRRC36Q1X8D7 754 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 KCNK18Q7Z418 384 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 MTBPQ96DY7 904 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 SEMA4AQ9H3S1 761 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 KLRC4O43908 158 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 KCNA3P22001 575 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 CAP2P40123 477 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 MIIPQ5JXC2 388 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 PRMT6Q96LA8 375 aaPredicted RBP16.05■□□□□ 0.16
CIITA-204ENST00000570546 GRID1Q9ULK0 1009 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 ARHGAP10A1A4S6 786 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 C3orf70A6NLC5 250 aaPredicted RBP16.05■□□□□ 0.16
CIITA-204ENST00000570546 TRIM49D1C9J1S8 452 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 DDX3XO00571 662 aaKnown RBP eCLIP16.05■□□□□ 0.16
CIITA-204ENST00000570546 RIPK2O43353 540 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 PROSCO94903 275 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 TAL1P17542 331 aaPredicted RBP16.05■□□□□ 0.16
CIITA-204ENST00000570546 HSD17B4P51659 736 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 TMEM259Q4ZIN3 620 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 TFDP3Q5H9I0 405 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 DAB2IPQ5VWQ8 1189 aa16.05■□□□□ 0.16
CIITA-204ENST00000570546 BTBD8Q5XKL5 378 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms