RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 A0A087X0T9 212 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 RCVRNP35243 200 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 HSD17B4P51659 736 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 POU5F1Q01860 360 aaKnown RBP13.37□□□□□ -0.27
USP47-202ENST00000339865 DNAJC3Q13217 504 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 PTRHD1Q6GMV3 140 aaKnown RBP13.37□□□□□ -0.27
USP47-202ENST00000339865 RNPC3Q96LT9 517 aaKnown RBP13.37□□□□□ -0.27
USP47-202ENST00000339865 TRIM62Q9BVG3 475 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 BTBD7Q9P203 1132 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 KCNH4Q9UQ05 1017 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 PNMA8CA0A1B0GUJ8 204 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 ATP1A1P05023 1023 aaKnown RBP13.37□□□□□ -0.27
USP47-202ENST00000339865 USP14P54578 494 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 RAD51Q06609 339 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 PHKG1Q16816 387 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 ERAP2Q6P179 960 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 CDKL3Q8IVW4 592 aaPredicted RBP13.37□□□□□ -0.27
USP47-202ENST00000339865 NACC2Q96BF6 587 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 LRRC1Q9BTT6 524 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 COMMD9Q9P000 198 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 H7C0S8 307 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 IL5RAQ01344 420 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 PTK7Q13308 1070 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 ALCAMQ13740 583 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 TTC39BQ5VTQ0 682 aaPredicted RBP13.37□□□□□ -0.27
USP47-202ENST00000339865 ING3Q9NXR8 418 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 LCMT1Q9UIC8 334 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 AGTP01019 485 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 CHRNB3Q05901 458 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 TWF1Q12792 350 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 NEDD8Q15843 81 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 USP17L2Q6R6M4 530 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 FAM213AQ9BRX8 229 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 ADI1Q9BV57 179 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 MANSC1Q9H8J5 431 aa13.37□□□□□ -0.27
USP47-202ENST00000339865 HOXA13P31271 388 aaPredicted RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 BTDP43251 543 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 UBE2SQ16763 222 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 CYB5D1Q6P9G0 228 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 TRIM65Q6PJ69 517 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 PEG10Q86TG7 708 aaKnown RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 SETD3Q86TU7 594 aaPredicted RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 UTP15Q8TED0 518 aaKnown RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 RAD51BO15315 384 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 FAM200BP0CF97 657 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 TNFAIP2Q03169 654 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 ADRM1Q16186 407 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 SLC13A5Q86YT5 568 aaPredicted RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 EFHBQ8N7U6 833 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 TMEM138Q9NPI0 162 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 CYP39A1Q9NYL5 469 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 TMEM120BA0PK00 339 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 GSSP48637 474 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 SERPINB8P50452 374 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 RASGRF1Q13972 1273 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 ERFEQ4G0M1 354 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 WDR60Q8WVS4 1066 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 BHMT2Q9H2M3 363 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 HAO1Q9UJM8 370 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 ZNF222Q9UK12 451 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 CASP4P49662 377 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 ARSJQ5FYB0 599 aaPredicted RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 PCDHGA4Q9Y5G9 962 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 EIF3DO15371 548 aaKnown RBP eCLIP13.36□□□□□ -0.27
USP47-202ENST00000339865 TPI1P60174 286 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 DRAP1Q14919 205 aaPredicted RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 LINC00301Q8NCQ3 95 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 URGCPQ8TCY9 931 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 IARS2Q9NSE4 1012 aaKnown RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 PCDHB6Q9Y5E3 794 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 MYH15Q9Y2K3 1946 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 CNTRLQ7Z7A1 2325 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 AP1G2O75843 785 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 CNTN1Q12860 1018 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 ATG14Q6ZNE5 492 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 CATSPER4Q7RTX7 472 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 SENP7Q9BQF6 1050 aa13.36□□□□□ -0.27
USP47-202ENST00000339865 MTIF3Q9H2K0 278 aaKnown RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 UBA2Q9UBT2 640 aaPredicted RBP13.36□□□□□ -0.27
USP47-202ENST00000339865 ZNF682O95780 498 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 PCP11498 1178 aaKnown RBP13.35□□□□□ -0.27
USP47-202ENST00000339865 SNX30Q5VWJ9 437 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 RBM15Q96T37 977 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP47-202ENST00000339865 CHID1Q9BWS9 393 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 NEU2Q9Y3R4 380 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 PDE4DIPQ5VU43 2346 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 EFCAB10A6NFE3 127 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 IDH3BO43837 385 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 NME5P56597 212 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 POU4F1Q01851 419 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 LCORLQ8N3X6 602 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 MAFFQ9ULX9 164 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 BTBD3Q9Y2F9 522 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 N6AMT1Q9Y5N5 214 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 C3orf70A6NLC5 250 aaPredicted RBP13.35□□□□□ -0.27
USP47-202ENST00000339865 PTGES3LE9PB15 166 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 HPGDP15428 266 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 TBXAS1P24557 533 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms