RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 MUC3BQ9H195 1237 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 DAPK2Q9UIK4 370 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 ACADSP16219 412 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 FMR1Q06787 632 aaKnown RBP eCLIP8.25□□□□□ -1.09
CIITA-201ENST00000324288 ATPAF2Q8N5M1 289 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 DHX36Q9H2U1 1008 aaKnown RBP8.25□□□□□ -1.09
CIITA-201ENST00000324288 CD274Q9NZQ7 290 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 STAP2Q9UGK3 403 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.25□□□□□ -1.09
CIITA-201ENST00000324288 LGR5O75473 907 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 AVPR1AP37288 418 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 CRKP46108 304 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 NFIL3Q16649 462 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 JADE3Q92613 823 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 OTUD5Q96G74 571 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 TRIM54Q9BYV2 358 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 DONSONQ9NYP3 566 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 LRRIQ3A6PVS8 624 aaPredicted RBP8.25□□□□□ -1.09
CIITA-201ENST00000324288 TWF1Q12792 350 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 SYNE4Q8N205 404 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 MTA3Q9BTC8 594 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 BLOC1S6Q9UL45 172 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 ATP7AQ04656 1500 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 DNMT1P26358 1616 aaKnown RBP8.25□□□□□ -1.09
CIITA-201ENST00000324288 TPD52L2O43399 206 aaKnown RBP8.25□□□□□ -1.09
CIITA-201ENST00000324288 MAGEA4P43358 317 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 ITGA8P53708 1063 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 SPIRE2Q8WWL2 714 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 GINS4Q9BRT9 223 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 ARHGEF38Q9NXL2 777 aa8.25□□□□□ -1.09
CIITA-201ENST00000324288 SAC3D1A6NKF1 404 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 MIF4GDA9UHW6 222 aaKnown RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 ACTR2P61160 394 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 NLRP10Q86W26 655 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 DOLKQ9UPQ8 538 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 ZBTB5O15062 677 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 TSHZ1Q6ZSZ6 1077 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 ZNF556Q9HAH1 456 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 MYO5CQ9NQX4 1742 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 POU1F1P28069 291 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 AGBL2Q5U5Z8 902 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 SENP7Q9BQF6 1050 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 RAB6BQ9NRW1 208 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 PER1O15534 1290 aaPredicted RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 PEX1O43933 1283 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 ECE2O60344 883 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 FAM107AO95990 144 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 YY1P25490 414 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 TXNRD1Q16881 649 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 KNOP1Q1ED39 458 aaKnown RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 TTC13Q8NBP0 860 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 OSBPL8Q9BZF1 889 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 FHDC1Q9C0D6 1143 aaPredicted RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 REXO4Q9GZR2 422 aaKnown RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 POLRMTO00411 1230 aaKnown RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 AGTP01019 485 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 PLEKP08567 350 aaPredicted RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 INAQ16352 499 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 C3orf62Q6ZUJ4 267 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 C19orf18Q8NEA5 215 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 LRRC39Q96DD0 335 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 VCPKMTQ9H867 229 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 FAM49BQ9NUQ9 324 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 PIPSLA2A3N6 862 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 RALAP11233 206 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 PSMB9P28065 219 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 ACAP1Q15027 740 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 RAD9BQ6WBX8 426 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 IPMKQ8NFU5 416 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 DDI1Q8WTU0 396 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 ZC3H15Q8WU90 426 aaKnown RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 CMTM5Q96DZ9 223 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 POLG2Q9UHN1 485 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 AP4S1Q9Y587 144 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 PTPRTO14522 1441 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 TRIP11Q15643 1979 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 TRIM13O60858 407 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 UBOX5O94941 541 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 CSNK2BP67870 215 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 TRIM32Q13049 653 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 MROH9Q5TGP6 573 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 FAM136AQ96C01 138 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 TMEM47Q9BQJ4 181 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 KDM4CQ9H3R0 1056 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 TASP1Q9H6P5 420 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 H3BQF6 201 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 UBXN8O00124 270 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 RASSF9O75901 435 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 BCL10O95999 233 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 CENPLQ8N0S6 344 aaPredicted RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 APPL2Q8NEU8 664 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 SYBUQ9NX95 663 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 PIN4Q9Y237 131 aaKnown RBP8.24□□□□□ -1.09
CIITA-201ENST00000324288 IFNAR1P17181 557 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 CDK17Q00537 523 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 RAD21L1Q9H4I0 556 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 FAM96AQ9H5X1 160 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 AGPAT5Q9NUQ2 364 aa8.24□□□□□ -1.09
CIITA-201ENST00000324288 ZBTB7AO95365 584 aa8.23□□□□□ -1.09
CIITA-201ENST00000324288 TDP2O95551 362 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms