RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 ZMAT2Q96NC0 199 aaKnown RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 GUCD1Q96NT3 240 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 TSPAN18Q96SJ8 248 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 CARD9Q9H257 536 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 NXF3Q9H4D5 531 aaKnown RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 RBM12Q9NTZ6 932 aaKnown RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 AGAP1Q9UPQ3 857 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 TRPV2Q9Y5S1 764 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 LAMA3Q16787 3333 aa12.65□□□□□ -0.39
TRIM40-205ENST00000307859 PGRMC1O00264 195 aaKnown RBP12.64□□□□□ -0.39
TRIM40-205ENST00000307859 CEP104O60308 925 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 RECQL4O94761 1208 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 HMGCRP04035 888 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 RPLP2P05387 115 aaKnown RBP12.64□□□□□ -0.39
TRIM40-205ENST00000307859 ELNP15502 786 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 RRM1P23921 792 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 RAP1GAPP47736 663 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 GUCY2FP51841 1108 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 RAD23BP54727 409 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 VSNL1P62760 191 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 INCA1Q0VD86 236 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 MESDQ14696 234 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 XKR4Q5GH76 650 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 DCAF12L1Q5VU92 463 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 TMCO3Q6UWJ1 677 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 FAM228AQ86W67 206 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 PASD1Q8IV76 773 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 ANKLE1Q8NAG6 615 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 WHAMMQ8TF30 809 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 TFAP2BQ92481 460 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 CD101Q93033 1021 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.64□□□□□ -0.39
TRIM40-205ENST00000307859 TRIM6Q9C030 488 aaPredicted RBP12.64□□□□□ -0.39
TRIM40-205ENST00000307859 ZNF518BQ9C0D4 1074 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 CXCL16Q9H2A7 254 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 SMYD3Q9H7B4 428 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 CHORDC1Q9UHD1 332 aaPredicted RBP12.64□□□□□ -0.39
TRIM40-205ENST00000307859 HES2Q9Y543 173 aa12.64□□□□□ -0.39
TRIM40-205ENST00000307859 M0QZ92 97 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 CILPO75339 1184 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 ASGR1P07306 291 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 COMTP21964 271 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 MMP8P22894 467 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 MCM3P25205 808 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 CTNNA2P26232 953 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 PLA2G5P39877 138 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 MAGEA10P43363 369 aaPredicted RBP12.63□□□□□ -0.39
TRIM40-205ENST00000307859 ZNF394Q53GI3 561 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 LIN9Q5TKA1 542 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 PLEKHA7Q6IQ23 1121 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 CCDC70Q6NSX1 233 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 RSPH3Q86UC2 560 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 TTC39CQ8N584 583 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 PXYLP1Q8TE99 480 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 WNT8BQ93098 351 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 PAWRQ96IZ0 340 aaKnown RBP12.63□□□□□ -0.39
TRIM40-205ENST00000307859 C11orf70Q9BRQ4 267 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 WNT8AQ9H1J5 351 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 PAK6Q9NQU5 681 aaPredicted RBP12.63□□□□□ -0.39
TRIM40-205ENST00000307859 RNF216Q9NWF9 866 aaPredicted RBP12.63□□□□□ -0.39
TRIM40-205ENST00000307859 ADAM22Q9P0K1 906 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 NOC2LQ9Y3T9 749 aaKnown RBP12.63□□□□□ -0.39
TRIM40-205ENST00000307859 CDY2AQ9Y6F7 541 aa12.63□□□□□ -0.39
TRIM40-205ENST00000307859 TMEM110-MUSTN1A8MSY1 372 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 MED7O43513 233 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 KCNE1P15382 129 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 SSTR3P32745 418 aaPredicted RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 CTNNA1P35221 906 aaKnown RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 CDH8P55286 799 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 TNNC1P63316 161 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 MGAT3Q09327 533 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 KCNA10Q16322 511 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 GLE1Q53GS7 698 aaKnown RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 MMS22LQ6ZRQ5 1243 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 C7orf61Q8IZ16 206 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 LRRC52Q8N7C0 313 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 SLC4A11Q8NBS3 891 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 TMEM35BQ8NCS4 154 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 BEST2Q8NFU1 509 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 ALG3Q92685 438 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 BTBD6Q96KE9 485 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 LRRC1Q9BTT6 524 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 UBE2OQ9C0C9 1292 aaKnown RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 SENP6Q9GZR1 1112 aaPredicted RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 ELOVL4Q9GZR5 314 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 LHX5Q9H2C1 402 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 MRPL47Q9HD33 250 aaKnown RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 ARFGAP3Q9NP61 516 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 TUBGCP4Q9UGJ1 667 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 ANAPC7Q9UJX3 599 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 ZMYND8Q9ULU4 1186 aaPredicted RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 UBQLN1Q9UMX0 589 aaKnown RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 TCRBV5S1A1TA0A578 114 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 CCDC66A2RUB6 948 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 ERLIN1O75477 346 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 CALB1P05937 261 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 PEX5P50542 639 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 PTPN11Q06124 597 aaPredicted RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 MYO1EQ12965 1108 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 WDTC1Q8N5D0 677 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms