RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF40	YNL288W	UBP8	P50102	471 aa		4.97	□□□□□ -1.61
CAF40	YNL288W	YIP1	P53039	248 aa		4.97	□□□□□ -1.61
CAF40	YNL288W	CWC25	P53854	179 aa	Known RBP	4.97	□□□□□ -1.61
CAF40	YNL288W	YNG1	Q08465	219 aa		4.97	□□□□□ -1.61
CAF40	YNL288W	YCT1	Q12235	531 aa		4.97	□□□□□ -1.61
CAF40	YNL288W	RPL13A	Q12690	199 aa	Predicted RBP	4.97	□□□□□ -1.61
CAF40	YNL288W	YOS1	Q3E834	85 aa		4.97	□□□□□ -1.61
CAF40	YNL288W	TPI1	P00942	248 aa	Known RBP	4.96	□□□□□ -1.62
CAF40	YNL288W	YCR061W	P25639	631 aa		4.96	□□□□□ -1.62
CAF40	YNL288W	ERV15	P38312	142 aa		4.96	□□□□□ -1.62
CAF40	YNL288W	LSM12	P38828	187 aa	Known RBP	4.96	□□□□□ -1.62
CAF40	YNL288W	VPS63	O13549	108 aa		4.95	□□□□□ -1.62
CAF40	YNL288W	RAD23	P32628	398 aa	Known RBP	4.95	□□□□□ -1.62
CAF40	YNL288W	YPT53	P36019	220 aa		4.95	□□□□□ -1.62
CAF40	YNL288W	YGR210C	P42942	411 aa		4.95	□□□□□ -1.62
CAF40	YNL288W	YDR415C	Q04033	374 aa	Predicted RBP	4.95	□□□□□ -1.62
CAF40	YNL288W	PAM18	Q07914	168 aa		4.95	□□□□□ -1.62
CAF40	YNL288W	SRL1	Q08673	210 aa		4.95	□□□□□ -1.62
CAF40	YNL288W	FEX2	Q08991	375 aa		4.95	□□□□□ -1.62
CAF40	YNL288W	ATO3	Q12359	275 aa		4.95	□□□□□ -1.62
CAF40	YNL288W	ATG31	Q12421	196 aa		4.95	□□□□□ -1.62
CAF40	YNL288W	URA2	P07259	2214 aa	Known RBP	4.95	□□□□□ -1.62
CAF40	YNL288W	GCN3	P14741	305 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	SAR1	P20606	190 aa	Known RBP	4.94	□□□□□ -1.62
CAF40	YNL288W	TOM40	P23644	387 aa	Known RBP	4.94	□□□□□ -1.62
CAF40	YNL288W	RRF1	P38771	230 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	GET2	P40056	285 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	YIR035C	P40579	254 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	DUG3	P53871	357 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	VPS28	Q02767	242 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	YMR166C	Q03829	368 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	HOF1	Q05080	669 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	RAX2	Q12465	1220 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	ISN1	Q99312	450 aa		4.94	□□□□□ -1.62
CAF40	YNL288W	SWM2	P40342	146 aa		4.93	□□□□□ -1.62
CAF40	YNL288W	YJR012C	P47087	207 aa		4.93	□□□□□ -1.62
CAF40	YNL288W	YNL234W	P53857	426 aa		4.93	□□□□□ -1.62
CAF40	YNL288W	YML122C	Q03207	126 aa		4.93	□□□□□ -1.62
CAF40	YNL288W	NGL2	Q03264	515 aa	Known RBP	4.93	□□□□□ -1.62
CAF40	YNL288W	FEX1	Q08913	375 aa		4.93	□□□□□ -1.62
CAF40	YNL288W	GRX2	P17695	143 aa	Known RBP	4.92	□□□□□ -1.62
CAF40	YNL288W	FEN2	P25621	512 aa	Known RBP	4.92	□□□□□ -1.62
CAF40	YNL288W	ACB1	P31787	87 aa		4.92	□□□□□ -1.62
CAF40	YNL288W	RTC3	P38804	111 aa	Predicted RBP	4.92	□□□□□ -1.62
CAF40	YNL288W	PHM8	P40025	321 aa		4.92	□□□□□ -1.62
CAF40	YNL288W	YGR151C	P53287	111 aa		4.92	□□□□□ -1.62
CAF40	YNL288W	MSO1	P53604	210 aa	Known RBP	4.92	□□□□□ -1.62
CAF40	YNL288W	ACT1	P60010	375 aa	Known RBP	4.92	□□□□□ -1.62
CAF40	YNL288W	FSH2	Q05015	223 aa		4.92	□□□□□ -1.62
CAF40	YNL288W	JID1	Q12350	301 aa		4.92	□□□□□ -1.62
CAF40	YNL288W	HTB1	P02293	131 aa	Known RBP	4.91	□□□□□ -1.62
CAF40	YNL288W	CKS1	P20486	150 aa	Known RBP	4.91	□□□□□ -1.62
CAF40	YNL288W	ERV1	P27882	189 aa		4.91	□□□□□ -1.62
CAF40	YNL288W	ATP3	P38077	311 aa	Known RBP	4.91	□□□□□ -1.62
CAF40	YNL288W	ARP3	P47117	449 aa	Known RBP	4.91	□□□□□ -1.62
CAF40	YNL288W	SSU72	P53538	206 aa	Predicted RBP	4.91	□□□□□ -1.62
CAF40	YNL288W	GPI15	P53961	229 aa		4.91	□□□□□ -1.62
CAF40	YNL288W	MSA1	Q08471	629 aa		4.91	□□□□□ -1.62
CAF40	YNL288W	FCY1	Q12178	158 aa		4.91	□□□□□ -1.62
CAF40	YNL288W	ATG5	Q12380	294 aa		4.91	□□□□□ -1.62
CAF40	YNL288W	YGL258W-A	Q3E740	77 aa		4.91	□□□□□ -1.62
CAF40	YNL288W	YBR255C-A	Q3E776	120 aa		4.91	□□□□□ -1.62
CAF40	YNL288W	YKL162C	P36052	402 aa		4.9	□□□□□ -1.63
CAF40	YNL288W	YKL075C	P36083	450 aa		4.9	□□□□□ -1.63
CAF40	YNL288W	YER137C	P40083	148 aa	Known RBP	4.9	□□□□□ -1.63
CAF40	YNL288W	PKP2	P53170	491 aa		4.9	□□□□□ -1.63
CAF40	YNL288W	PNC1	P53184	216 aa	Known RBP	4.9	□□□□□ -1.63
CAF40	YNL288W	YGR050C	P53231	118 aa		4.9	□□□□□ -1.63
CAF40	YNL288W	YIF1	P53845	314 aa	Known RBP	4.9	□□□□□ -1.63
CAF40	YNL288W	USV1	Q12132	391 aa		4.9	□□□□□ -1.63
CAF40	YNL288W	AIM45	Q12480	344 aa	Known RBP	4.9	□□□□□ -1.63
CAF40	YNL288W	YLR146W-A	Q2V2P1	62 aa		4.9	□□□□□ -1.63
CAF40	YNL288W	NOP1	P15646	327 aa	Known RBP	4.89	□□□□□ -1.63
CAF40	YNL288W	TIP1	P27654	210 aa	Predicted RBP	4.89	□□□□□ -1.63
CAF40	YNL288W	PDC2	P32896	925 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	YNK1	P36010	153 aa	Known RBP	4.89	□□□□□ -1.63
CAF40	YNL288W	PRY2	P36110	329 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	SLM6	P38343	150 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	GEP4	P38812	185 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	DFG10	P40526	253 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	TAX4	P47030	604 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	YMR090W	Q04304	227 aa	Known RBP	4.89	□□□□□ -1.63
CAF40	YNL288W	ERP1	Q05359	219 aa	Known RBP	4.89	□□□□□ -1.63
CAF40	YNL288W	MCH1	Q07376	486 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	RRT7	Q07829	113 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	YPL264C	Q08980	353 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	RAD28	Q12021	506 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	AEP3	Q12089	606 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	RKI1	Q12189	258 aa		4.89	□□□□□ -1.63
CAF40	YNL288W	SEC22	P22214	214 aa		4.88	□□□□□ -1.63
CAF40	YNL288W	YKL102C	P34249	101 aa		4.88	□□□□□ -1.63
CAF40	YNL288W	PRS4	P38063	326 aa	Predicted RBP	4.88	□□□□□ -1.63
CAF40	YNL288W	PSD1	P39006	500 aa		4.88	□□□□□ -1.63
CAF40	YNL288W	YEA6	P39953	335 aa		4.88	□□□□□ -1.63
CAF40	YNL288W	RFC2	P40348	353 aa		4.88	□□□□□ -1.63
CAF40	YNL288W	ECM27	P47144	725 aa		4.88	□□□□□ -1.63
CAF40	YNL288W	DID2	P69771	204 aa		4.88	□□□□□ -1.63
CAF40	YNL288W	SPG4	Q04438	115 aa		4.88	□□□□□ -1.63
CAF40	YNL288W	YPS3	Q12303	508 aa		4.88	□□□□□ -1.63
CAF40	YNL288W	ILV5	P06168	395 aa	Known RBP	4.87	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 9.5 ms