RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W RPL9AP05738 191 aaKnown RBP3.66□□□□□ -1.82
PRE9YGR135W RPL42AP0CX27 106 aaKnown RBP3.66□□□□□ -1.82
PRE9YGR135W RPL42BP0CX28 106 aaKnown RBP3.66□□□□□ -1.82
PRE9YGR135W MRS4P23500 304 aa3.66□□□□□ -1.82
PRE9YGR135W ATG15P25641 520 aa3.66□□□□□ -1.82
PRE9YGR135W ARO4P32449 370 aaKnown RBP3.66□□□□□ -1.82
PRE9YGR135W ALK2P32789 676 aaPredicted RBP3.66□□□□□ -1.82
PRE9YGR135W SUI1P32911 108 aaKnown RBP3.66□□□□□ -1.82
PRE9YGR135W SLM6P38343 150 aa3.66□□□□□ -1.82
PRE9YGR135W SHO1P40073 367 aa3.66□□□□□ -1.82
PRE9YGR135W YIL067CP40514 678 aa3.66□□□□□ -1.82
PRE9YGR135W RPL9BP51401 191 aaKnown RBP3.66□□□□□ -1.82
PRE9YGR135W YLR152CP54072 576 aa3.66□□□□□ -1.82
PRE9YGR135W ERG13P54839 491 aaKnown RBP3.66□□□□□ -1.82
PRE9YGR135W INP1Q03694 420 aa3.66□□□□□ -1.82
PRE9YGR135W THI74Q04083 370 aa3.66□□□□□ -1.82
PRE9YGR135W NDE2Q07500 545 aa3.66□□□□□ -1.82
PRE9YGR135W HRT1Q08273 121 aa3.66□□□□□ -1.82
PRE9YGR135W AKR2Q12013 749 aa3.66□□□□□ -1.82
PRE9YGR135W MCT1Q12283 360 aa3.66□□□□□ -1.82
PRE9YGR135W RAX2Q12465 1220 aa3.66□□□□□ -1.82
PRE9YGR135W YDR524C-BQ3E6R4 66 aa3.66□□□□□ -1.82
PRE9YGR135W STT4P37297 1900 aa3.66□□□□□ -1.82
PRE9YGR135W NHP6AP11632 93 aaKnown RBP3.65□□□□□ -1.83
PRE9YGR135W BGL2P15703 313 aaKnown RBP3.65□□□□□ -1.83
PRE9YGR135W TOA2P32774 122 aa3.65□□□□□ -1.83
PRE9YGR135W TRS65P32893 560 aa3.65□□□□□ -1.83
PRE9YGR135W MRPL11P36521 249 aaPredicted RBP3.65□□□□□ -1.83
PRE9YGR135W ARC40P38328 384 aaKnown RBP3.65□□□□□ -1.83
PRE9YGR135W YBR292CP38357 123 aa3.65□□□□□ -1.83
PRE9YGR135W YER085CP40058 173 aa3.65□□□□□ -1.83
PRE9YGR135W SIM1P40472 476 aa3.65□□□□□ -1.83
PRE9YGR135W PAU5P43575 122 aa3.65□□□□□ -1.83
PRE9YGR135W COX16P47081 118 aa3.65□□□□□ -1.83
PRE9YGR135W YJR012CP47087 207 aa3.65□□□□□ -1.83
PRE9YGR135W NSA1P53136 463 aaPredicted RBP3.65□□□□□ -1.83
PRE9YGR135W YNR066CP53752 436 aa3.65□□□□□ -1.83
PRE9YGR135W SAE3P89114 91 aa3.65□□□□□ -1.83
PRE9YGR135W VPS28Q02767 242 aa3.65□□□□□ -1.83
PRE9YGR135W YMR082CQ04276 118 aa3.65□□□□□ -1.83
PRE9YGR135W FSH2Q05015 223 aa3.65□□□□□ -1.83
PRE9YGR135W MRX8Q05473 314 aa3.65□□□□□ -1.83
PRE9YGR135W PIN3Q06449 215 aa3.65□□□□□ -1.83
PRE9YGR135W PBP4Q07362 185 aaKnown RBP3.65□□□□□ -1.83
PRE9YGR135W VPS68Q12016 184 aa3.65□□□□□ -1.83
PRE9YGR135W TPT1Q12272 230 aaKnown RBP3.65□□□□□ -1.83
PRE9YGR135W CRC1Q12289 327 aa3.65□□□□□ -1.83
PRE9YGR135W ATG5Q12380 294 aa3.65□□□□□ -1.83
PRE9YGR135W TDH3P00359 332 aaKnown RBP RIP-Chip data3.64□□□□□ -1.83not detected
PRE9YGR135W RPS25BP0C0T4 108 aaKnown RBP3.64□□□□□ -1.83
PRE9YGR135W STP22P25604 385 aa3.64□□□□□ -1.83
PRE9YGR135W CWP1P28319 239 aa3.64□□□□□ -1.83
PRE9YGR135W GLC7P32598 312 aaKnown RBP3.64□□□□□ -1.83
PRE9YGR135W UMP1P38293 148 aa3.64□□□□□ -1.83
PRE9YGR135W SSH1P38353 490 aaKnown RBP3.64□□□□□ -1.83
PRE9YGR135W RTC3P38804 111 aaPredicted RBP3.64□□□□□ -1.83
PRE9YGR135W NSA2P40078 261 aaKnown RBP3.64□□□□□ -1.83
PRE9YGR135W YIL152WP40455 235 aa3.64□□□□□ -1.83
PRE9YGR135W XBP1P40489 647 aa3.64□□□□□ -1.83
PRE9YGR135W CFD1P40558 293 aa3.64□□□□□ -1.83
PRE9YGR135W GLC8P41818 229 aa3.64□□□□□ -1.83
PRE9YGR135W FLC3P53121 802 aa3.64□□□□□ -1.83
PRE9YGR135W LST7P53237 242 aa3.64□□□□□ -1.83
PRE9YGR135W TPC1P53257 314 aa3.64□□□□□ -1.83
PRE9YGR135W ATG10Q07879 167 aa3.64□□□□□ -1.83
PRE9YGR135W POM33Q12164 279 aa3.64□□□□□ -1.83
PRE9YGR135W RPS25AQ3E792 108 aaPredicted RBP3.64□□□□□ -1.83
PRE9YGR135W CDC36P06100 191 aaPredicted RBP3.63□□□□□ -1.83
PRE9YGR135W YKR104WP0CE69 306 aa3.63□□□□□ -1.83
PRE9YGR135W RPL20AP0CX23 172 aaKnown RBP3.63□□□□□ -1.83
PRE9YGR135W RPL20BP0CX24 172 aaPredicted RBP3.63□□□□□ -1.83
PRE9YGR135W CTA1P15202 515 aa3.63□□□□□ -1.83
PRE9YGR135W UPS2P35200 230 aa3.63□□□□□ -1.83
PRE9YGR135W SWD2P36104 329 aaPredicted RBP3.63□□□□□ -1.83
PRE9YGR135W RPL14AP36105 138 aaKnown RBP3.63□□□□□ -1.83
PRE9YGR135W TRM7P38238 310 aaKnown RBP3.63□□□□□ -1.83
PRE9YGR135W OM14P38325 134 aa3.63□□□□□ -1.83
PRE9YGR135W RPL14BP38754 138 aaKnown RBP3.63□□□□□ -1.83
PRE9YGR135W IRC22P40006 225 aa3.63□□□□□ -1.83
PRE9YGR135W ERJ5P43613 295 aaPredicted RBP3.63□□□□□ -1.83
PRE9YGR135W PAU4P53427 120 aa3.63□□□□□ -1.83
PRE9YGR135W YML096WQ04489 525 aa3.63□□□□□ -1.83
PRE9YGR135W GTO3Q04806 366 aa3.63□□□□□ -1.83
PRE9YGR135W COA2Q3E823 68 aa3.63□□□□□ -1.83
PRE9YGR135W PAU1P0CE88 120 aa3.62□□□□□ -1.83
PRE9YGR135W PAU14P0CE89 120 aa3.62□□□□□ -1.83
PRE9YGR135W PAU6P0CE90 120 aa3.62□□□□□ -1.83
PRE9YGR135W PAU18P0CE91 120 aa3.62□□□□□ -1.83
PRE9YGR135W PAU8P0CE92 120 aa3.62□□□□□ -1.83
PRE9YGR135W PAU11P0CE93 120 aa3.62□□□□□ -1.83
PRE9YGR135W STE18P18852 110 aa3.62□□□□□ -1.83
PRE9YGR135W YCR025CP25352 136 aa3.62□□□□□ -1.83
PRE9YGR135W TIR2P33890 251 aa3.62□□□□□ -1.83
PRE9YGR135W GPX1P36014 167 aa3.62□□□□□ -1.83
PRE9YGR135W YBR096WP38256 230 aa3.62□□□□□ -1.83
PRE9YGR135W PAU13P38725 120 aa3.62□□□□□ -1.83
PRE9YGR135W HSP10P38910 106 aa3.62□□□□□ -1.83
PRE9YGR135W MST28P39552 234 aa3.62□□□□□ -1.83
PRE9YGR135W SMD3P43321 101 aaKnown RBP3.62□□□□□ -1.83
PRE9YGR135W KEG1P43614 200 aa3.62□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 387 ms