RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	TDA6	Q06466	467 aa		11.56	□□□□□ -0.56
DEP1	YAL013W	YPR071W	Q12346	211 aa		11.56	□□□□□ -0.56
DEP1	YAL013W	UPS2	P35200	230 aa		11.55	□□□□□ -0.56
DEP1	YAL013W	YNR066C	P53752	436 aa		11.55	□□□□□ -0.56
DEP1	YAL013W	DCS1	Q06151	350 aa		11.55	□□□□□ -0.56
DEP1	YAL013W	SDO1	Q07953	250 aa	Known RBP	11.55	□□□□□ -0.56
DEP1	YAL013W	CSI2	Q08054	341 aa		11.55	□□□□□ -0.56
DEP1	YAL013W	COX19	Q3E731	98 aa		11.55	□□□□□ -0.56
DEP1	YAL013W	COX15	P40086	486 aa		11.54	□□□□□ -0.56
DEP1	YAL013W	ABM1	P47146	123 aa		11.54	□□□□□ -0.56
DEP1	YAL013W	RAX2	Q12465	1220 aa		11.54	□□□□□ -0.56
DEP1	YAL013W	URA5	P13298	226 aa	Known RBP	11.53	□□□□□ -0.56
DEP1	YAL013W	ATP3	P38077	311 aa	Known RBP	11.53	□□□□□ -0.56
DEP1	YAL013W	CRH1	P53301	507 aa		11.53	□□□□□ -0.56
DEP1	YAL013W	YLR179C	Q06252	201 aa	Known RBP	11.53	□□□□□ -0.56
DEP1	YAL013W	YDL242W	Q07746	117 aa		11.53	□□□□□ -0.56
DEP1	YAL013W	VMA9	Q3E7B6	73 aa		11.53	□□□□□ -0.56
DEP1	YAL013W	SHG1	P38337	142 aa		11.52	□□□□□ -0.57
DEP1	YAL013W	YGR269W	P40326	108 aa		11.52	□□□□□ -0.57
DEP1	YAL013W	CAF16	P43569	289 aa		11.52	□□□□□ -0.57
DEP1	YAL013W	YGR045C	P53229	120 aa		11.52	□□□□□ -0.57
DEP1	YAL013W	USV1	Q12132	391 aa		11.52	□□□□□ -0.57
DEP1	YAL013W	HEM13	P11353	328 aa	Known RBP	11.51	□□□□□ -0.57
DEP1	YAL013W	BGL2	P15703	313 aa	Known RBP	11.51	□□□□□ -0.57
DEP1	YAL013W	LDS1	P31379	325 aa		11.51	□□□□□ -0.57
DEP1	YAL013W	VMA11	P32842	164 aa		11.51	□□□□□ -0.57
DEP1	YAL013W	YBR292C	P38357	123 aa		11.51	□□□□□ -0.57
DEP1	YAL013W	PEX7	P39108	375 aa		11.51	□□□□□ -0.57
DEP1	YAL013W	YJR056C	P47115	236 aa		11.51	□□□□□ -0.57
DEP1	YAL013W	ADD37	Q03233	198 aa		11.51	□□□□□ -0.57
DEP1	YAL013W	URA2	P07259	2214 aa	Known RBP	11.51	□□□□□ -0.57
DEP1	YAL013W	NOP1	P15646	327 aa	Known RBP	11.5	□□□□□ -0.57
DEP1	YAL013W	FCY2	P17064	533 aa		11.5	□□□□□ -0.57
DEP1	YAL013W	AHT1	P29589	182 aa		11.5	□□□□□ -0.57
DEP1	YAL013W	MSK1	P32048	576 aa		11.5	□□□□□ -0.57
DEP1	YAL013W	FRQ1	Q06389	190 aa		11.5	□□□□□ -0.57
DEP1	YAL013W	ATO3	Q12359	275 aa		11.5	□□□□□ -0.57
DEP1	YAL013W	GEP5	Q12393	293 aa		11.5	□□□□□ -0.57
DEP1	YAL013W	SRB6	P32570	121 aa		11.49	□□□□□ -0.57
DEP1	YAL013W	RTC3	P38804	111 aa	Predicted RBP	11.49	□□□□□ -0.57
DEP1	YAL013W	YNL234W	P53857	426 aa		11.49	□□□□□ -0.57
DEP1	YAL013W	DYN2	Q02647	92 aa		11.49	□□□□□ -0.57
DEP1	YAL013W	TMA23	Q03525	211 aa		11.49	□□□□□ -0.57
DEP1	YAL013W	POC4	Q12245	148 aa	Predicted RBP	11.49	□□□□□ -0.57
DEP1	YAL013W	TY1A-DR3	Q12441	440 aa		11.49	□□□□□ -0.57
DEP1	YAL013W	Q0142	Q9ZZW4	58 aa		11.49	□□□□□ -0.57
DEP1	YAL013W	ADE8	P04161	214 aa		11.48	□□□□□ -0.57
DEP1	YAL013W	ECM25	P32525	599 aa		11.48	□□□□□ -0.57
DEP1	YAL013W	YKR045C	P36138	183 aa		11.48	□□□□□ -0.57
DEP1	YAL013W	HXT14	P42833	540 aa		11.48	□□□□□ -0.57
DEP1	YAL013W	YOR015W	Q12169	119 aa		11.48	□□□□□ -0.57
DEP1	YAL013W	HTB1	P02293	131 aa	Known RBP	11.47	□□□□□ -0.57
DEP1	YAL013W	YBR184W	P38299	523 aa		11.47	□□□□□ -0.57
DEP1	YAL013W	FLO5	P38894	1075 aa		11.47	□□□□□ -0.57
DEP1	YAL013W	NSA2	P40078	261 aa	Known RBP	11.47	□□□□□ -0.57
DEP1	YAL013W	YIL024C	P40543	189 aa		11.47	□□□□□ -0.57
DEP1	YAL013W	YMR317W	Q04893	1140 aa		11.47	□□□□□ -0.57
DEP1	YAL013W	DAL4	Q04895	635 aa		11.47	□□□□□ -0.57
DEP1	YAL013W	TMA10	Q06177	86 aa		11.47	□□□□□ -0.57
DEP1	YAL013W	TRP4	P07285	380 aa	Predicted RBP	11.46	□□□□□ -0.57
DEP1	YAL013W	RPS25B	P0C0T4	108 aa	Known RBP	11.46	□□□□□ -0.57
DEP1	YAL013W	WSS1	P38838	269 aa		11.46	□□□□□ -0.57
DEP1	YAL013W	MCM22	P47167	239 aa		11.46	□□□□□ -0.57
DEP1	YAL013W	SSU72	P53538	206 aa	Predicted RBP	11.46	□□□□□ -0.57
DEP1	YAL013W	ERV25	P54837	211 aa	Known RBP	11.46	□□□□□ -0.57
DEP1	YAL013W	RPS25A	Q3E792	108 aa	Predicted RBP	11.46	□□□□□ -0.57
DEP1	YAL013W	YJL213W	P40896	331 aa		11.45	□□□□□ -0.58
DEP1	YAL013W	BNA1	P47096	177 aa		11.45	□□□□□ -0.58
DEP1	YAL013W	MRS3	P10566	314 aa		11.44	□□□□□ -0.58
DEP1	YAL013W	CNB1	P25296	175 aa		11.44	□□□□□ -0.58
DEP1	YAL013W	ELO2	P25358	347 aa		11.44	□□□□□ -0.58
DEP1	YAL013W	CDC50	P25656	391 aa		11.44	□□□□□ -0.58
DEP1	YAL013W	SHB17	P36136	271 aa	Known RBP	11.44	□□□□□ -0.58
DEP1	YAL013W	DAL3	P32459	195 aa		11.43	□□□□□ -0.58
DEP1	YAL013W	NOP16	P40007	231 aa	Known RBP	11.43	□□□□□ -0.58
DEP1	YAL013W	SMD3	P43321	101 aa	Known RBP	11.43	□□□□□ -0.58
DEP1	YAL013W	YIP1	P53039	248 aa		11.43	□□□□□ -0.58
DEP1	YAL013W	TDH1	P00360	332 aa	Known RBP	11.42	□□□□□ -0.58
DEP1	YAL013W	SOD1	P00445	154 aa	Known RBP	11.42	□□□□□ -0.58
DEP1	YAL013W	QCR9	P22289	66 aa		11.42	□□□□□ -0.58
DEP1	YAL013W	SPO13	P23624	291 aa		11.42	□□□□□ -0.58
DEP1	YAL013W	FPR2	P32472	135 aa		11.42	□□□□□ -0.58
DEP1	YAL013W	YBL059W	P34224	193 aa		11.42	□□□□□ -0.58
DEP1	YAL013W	YGR151C	P53287	111 aa		11.42	□□□□□ -0.58
DEP1	YAL013W	BOR1	P53838	576 aa		11.42	□□□□□ -0.58
DEP1	YAL013W	FCY1	Q12178	158 aa		11.42	□□□□□ -0.58
DEP1	YAL013W	LST8	P41318	303 aa		11.41	□□□□□ -0.58
DEP1	YAL013W	RAD28	Q12021	506 aa		11.41	□□□□□ -0.58
DEP1	YAL013W	POM34	Q12445	299 aa		11.41	□□□□□ -0.58
DEP1	YAL013W	TOM40	P23644	387 aa	Known RBP	11.4	□□□□□ -0.58
DEP1	YAL013W	QDR3	P38227	689 aa		11.4	□□□□□ -0.58
DEP1	YAL013W	YJL163C	P46996	555 aa		11.4	□□□□□ -0.58
DEP1	YAL013W	GNP1	P48813	663 aa		11.4	□□□□□ -0.58
DEP1	YAL013W	RIB4	P50861	169 aa	Predicted RBP	11.4	□□□□□ -0.58
DEP1	YAL013W	CAF40	P53829	373 aa		11.4	□□□□□ -0.58
DEP1	YAL013W	AVO2	Q04749	426 aa		11.4	□□□□□ -0.58
DEP1	YAL013W	ARR3	Q06598	404 aa		11.4	□□□□□ -0.58
DEP1	YAL013W	MCH1	Q07376	486 aa		11.4	□□□□□ -0.58
DEP1	YAL013W	YJR015W	P47090	510 aa		11.39	□□□□□ -0.59
DEP1	YAL013W	PUS4	P48567	403 aa	Known RBP	11.39	□□□□□ -0.59

Retrieved 100 of 5,963 RNA–protein pairs in 103.4 ms