RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 LRPAP1P30533 357 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 HOXD13P35453 343 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 BRCC3P46736 316 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 ASIC1P78348 528 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 AMPD3Q01432 767 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 POU5F1Q01860 360 aaKnown RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 CREMQ03060 361 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 PPP2R3AQ06190 1150 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 SPAG1Q07617 926 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 PSMD5Q16401 504 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 RARS2Q5T160 578 aaKnown RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 KANK3Q6NY19 840 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 LILRA6Q6PI73 481 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 EPM2AIP1Q7L775 607 aaPredicted RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 CMASQ8NFW8 434 aaPredicted RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 HPS3Q969F9 1004 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 TSPAN18Q96SJ8 248 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 POP1Q99575 1024 aaKnown RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 CLSTN3Q9BQT9 956 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 PYM1Q9BRP8 204 aaKnown RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 SFXN1Q9H9B4 322 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 RPF1Q9H9Y2 349 aaKnown RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 MAN1C1Q9NR34 630 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 AGO2Q9UKV8 859 aaKnown RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 UBQLN1Q9UMX0 589 aaKnown RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 EXOC7Q9UPT5 735 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.18□□□□□ -0.46
SMAD4-211ENST00000590499 DOCK8Q8NF50 2099 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 MYO10Q9HD67 2058 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 TSC2P49815 1807 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 A0A1B0GVL5 298 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 I3L4J1 428 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 ADAM12O43184 909 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 TGM5O43548 720 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 PRPF6O94906 941 aaKnown RBP12.17□□□□□ -0.46
SMAD4-211ENST00000590499 SLFN14P0C7P3 912 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 CYP3A5P20815 502 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 TKTP29401 623 aaKnown RBP12.17□□□□□ -0.46
SMAD4-211ENST00000590499 CASP1P29466 404 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 ACOT2P49753 483 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 ARID5BQ14865 1188 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 POSTNQ15063 836 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 CES5AQ6NT32 575 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 PDXDC1Q6P996 788 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 UNC13DQ70J99 1090 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 CD302Q8IX05 232 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 ZSWIM2Q8NEG5 633 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 HDAC7Q8WUI4 952 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 NECTIN4Q96NY8 510 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 CDK15Q96Q40 435 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 RHOBTB2Q9BYZ6 727 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 SCAND2PQ9GZW5 306 aaPredicted RBP12.17□□□□□ -0.46
SMAD4-211ENST00000590499 POMKQ9H5K3 350 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 MTRRQ9UBK8 725 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 FBXW11Q9UKB1 542 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 DERAQ9Y315 318 aa12.17□□□□□ -0.46
SMAD4-211ENST00000590499 SYN3O14994 580 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 EIF3DO15371 548 aaKnown RBP eCLIP12.16□□□□□ -0.46
SMAD4-211ENST00000590499 TRAPPC3O43617 180 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 KLRC4O43908 158 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 TBC1D4O60343 1298 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 NFICP08651 508 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 WEE2P0C1S8 567 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 TIMP2P16035 220 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 GARTP22102 1010 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 MTHFRP42898 656 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 AARSP49588 968 aaKnown RBP eCLIP12.16□□□□□ -0.46
SMAD4-211ENST00000590499 GUCY2FP51841 1108 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 CUL4BQ13620 913 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 MRPL58Q14197 206 aaKnown RBP12.16□□□□□ -0.46
SMAD4-211ENST00000590499 FAM26FQ5R3K3 315 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 SPATA1Q5VX52 437 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 JADE1Q6IE81 842 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 RSPO2Q6UXX9 243 aaPredicted RBP12.16□□□□□ -0.46
SMAD4-211ENST00000590499 TMC5Q6UXY8 1006 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 C15orf39Q6ZRI6 1047 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 GPR149Q86SP6 731 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 CEP57Q86XR8 500 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 PALB2Q86YC2 1186 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 GLYCTKQ8IVS8 523 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 GRAMD1CQ8IYS0 662 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 POMGNT1Q8WZA1 660 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 ZNF707Q96C28 371 aaPredicted RBP12.16□□□□□ -0.46
SMAD4-211ENST00000590499 SUSD3Q96L08 255 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 CBWD1Q9BRT8 395 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 BLZF1Q9H2G9 400 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 PLEKHA4Q9H4M7 779 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 ASB7Q9H672 318 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 TMEM206Q9H813 350 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 SERTAD1Q9UHV2 236 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 C2CD2Q9Y426 696 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 BACE2Q9Y5Z0 518 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 TECTAO75443 2155 aa12.16□□□□□ -0.46
SMAD4-211ENST00000590499 NOTCH4Q99466 2003 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 PVALEFA0A1B0GWK0 134 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 A0A1W2PQ27 194 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 A0A1W2PQ64 194 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 A0A1W2PQD8 194 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 PI4K2BG5E9Z4 385 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 M0QZQ0 153 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms