RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 UCHL3P15374 230 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 PBX2P40425 430 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 ASPAP45381 313 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 MFAP3P55082 362 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 POLR2FP61218 127 aaKnown RBP10.3□□□□□ -0.76
CUX1-216ENST00000558469 CUL2Q13617 745 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 ARHGAP44Q17R89 818 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 TMEM173Q86WV6 379 aaPredicted RBP10.3□□□□□ -0.76
CUX1-216ENST00000558469 EFCAB3Q8N7B9 438 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 APPL2Q8NEU8 664 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 BCL7CQ8WUZ0 217 aaPredicted RBP10.3□□□□□ -0.76
CUX1-216ENST00000558469 CPLX3Q8WVH0 158 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 ANP32BQ92688 251 aaKnown RBP10.3□□□□□ -0.76
CUX1-216ENST00000558469 KAT5Q92993 513 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 IGSF21Q96ID5 467 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 ARID3AQ99856 593 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 NUP58Q9BVL2 599 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 PBX4Q9BYU1 374 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 NIF3L1Q9GZT8 377 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 GANQ9H2C0 597 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 PRO3102Q9H379 93 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 SMYD3Q9H7B4 428 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 NLRC4Q9NPP4 1024 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 MARCH5Q9NX47 278 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 GDAP2Q9NXN4 497 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 SPG21Q9NZD8 308 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 MSRAQ9UJ68 235 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 AJAP1Q9UKB5 411 aaPredicted RBP10.3□□□□□ -0.76
CUX1-216ENST00000558469 YBX2Q9Y2T7 364 aaKnown RBP10.3□□□□□ -0.76
CUX1-216ENST00000558469 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.3□□□□□ -0.766e-7■□□□□ 10
CUX1-216ENST00000558469 FHOD1Q9Y613 1164 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 RANBP2P49792 3224 aaKnown RBP10.3□□□□□ -0.76
CUX1-216ENST00000558469 ITIH6Q6UXX5 1313 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 ATG2AQ2TAZ0 1938 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 CARNS1A5YM72 827 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 M0QZQ0 153 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 ARHGEF15O94989 841 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 WEE2P0C1S8 567 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 LINC00271P0C7V0 271 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 ODC1P11926 461 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 CD58P19256 250 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 PAX3P23760 479 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 TBXAS1P24557 533 aaPredicted RBP10.29□□□□□ -0.76
CUX1-216ENST00000558469 CDC25BP30305 580 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 CTNNB1P35222 781 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 BMPR1AP36894 532 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 RAP1GAPP47736 663 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 AARSP49588 968 aaKnown RBP eCLIP10.29□□□□□ -0.763e-6■■■■■ 61.8
CUX1-216ENST00000558469 CDH8P55286 799 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 GCNT1Q02742 428 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 RAPGEF1Q13905 1077 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 RAB30Q15771 203 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 SOWAHAQ2M3V2 549 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 IQCEQ6IPM2 695 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 FUT10Q6P4F1 479 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 TAS1R1Q7RTX1 841 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 CACNA2D4Q7Z3S7 1137 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 PPFIBP1Q86W92 1011 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 SLC39A11Q8N1S5 342 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 SPC24Q8NBT2 197 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 TMEM169Q96HH4 297 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 SUSD3Q96L08 255 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 FAM81BQ96LP2 452 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 KREMEN1Q96MU8 473 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 NAA15Q9BXJ9 866 aaKnown RBP10.29□□□□□ -0.76
CUX1-216ENST00000558469 BCO2Q9BYV7 579 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 GPR62Q9BZJ7 368 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 SDCBP2Q9H190 292 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 NKX2-4Q9H2Z4 354 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 CEP72Q9P209 647 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 MTUS1Q9ULD2 1270 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 L1RE1Q9UN81 338 aa10.29□□□□□ -0.76
CUX1-216ENST00000558469 TIMM13Q9Y5L4 95 aaPredicted RBP10.29□□□□□ -0.76
CUX1-216ENST00000558469 SF3B1O75533 1304 aaKnown RBP eCLIP10.29□□□□□ -0.765e-6■■■■■ 56.8
CUX1-216ENST00000558469 A0A1W2PQJ5 194 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 FGF18O76093 207 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 GYPCP04921 128 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 RFX1P22670 979 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 TKTP29401 623 aaKnown RBP10.28□□□□□ -0.76
CUX1-216ENST00000558469 CASP14P31944 242 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 PPM1AP35813 382 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 USP8P40818 1118 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 KRT17Q04695 432 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 ELAVL2Q12926 359 aaKnown RBP10.28□□□□□ -0.76
CUX1-216ENST00000558469 TRIM14Q14142 442 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 DRAP1Q14919 205 aaPredicted RBP10.28□□□□□ -0.76
CUX1-216ENST00000558469 FIGNQ5HY92 759 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 FAM171A1Q5VUB5 890 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 WSCD1Q658N2 575 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 ENOSF1Q7L5Y1 443 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 DPH6Q7L8W6 267 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 SPRED2Q7Z698 418 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.28□□□□□ -0.76
CUX1-216ENST00000558469 METTL23Q86XA0 190 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 CEP57Q86XR8 500 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 ADGRF2Q8IZF7 708 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 PDCL2Q8N4E4 241 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 TOP6BLQ8N6T0 577 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 KLHL23Q8NBE8 558 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 IQCDQ96DY2 449 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms