RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 SNAP25P60880 206 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 IKQ13123 557 aaPredicted RBP20.84■□□□□ 0.93
SDF4-205ENST00000465727 CUL3Q13618 768 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 SEPT7Q16181 437 aaKnown RBP20.84■□□□□ 0.93
SDF4-205ENST00000465727 EFHC2Q5JST6 749 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 CENPUQ71F23 418 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 ZNF184Q99676 751 aaPredicted RBP20.84■□□□□ 0.93
SDF4-205ENST00000465727 EHMT1Q9H9B1 1298 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 MTO1Q9Y2Z2 717 aaKnown RBP20.84■□□□□ 0.93
SDF4-205ENST00000465727 UMODL1Q5DID0 1318 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 TISP43B9A030 160 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 TGDSO95455 350 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 FGFR1P11362 822 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 KRT4P19013 534 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 GEMIN4P57678 1058 aaKnown RBP20.84■□□□□ 0.93
SDF4-205ENST00000465727 GTF2BQ00403 316 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 CERKLQ49MI3 558 aaPredicted RBP20.84■□□□□ 0.93
SDF4-205ENST00000465727 DAB2IPQ5VWQ8 1189 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 B3GNT9Q6UX72 402 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 VPS52Q8N1B4 723 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 FBXL13Q8NEE6 735 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 DTNBP1Q96EV8 351 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 GORASP1Q9BQQ3 440 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 MAK16Q9BXY0 300 aaKnown RBP20.84■□□□□ 0.93
SDF4-205ENST00000465727 PHACTR1Q9C0D0 580 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 UNC45AQ9H3U1 944 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 KCNQ5Q9NR82 932 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 SHOC2Q9UQ13 582 aa20.84■□□□□ 0.93
SDF4-205ENST00000465727 TBX10O75333 385 aa20.83■□□□□ 0.93
SDF4-205ENST00000465727 KRT36O76013 467 aa20.83■□□□□ 0.93
SDF4-205ENST00000465727 MAPK6Q16659 721 aa20.83■□□□□ 0.93
SDF4-205ENST00000465727 CRY2Q49AN0 593 aa20.83■□□□□ 0.93
SDF4-205ENST00000465727 EAPPQ56P03 285 aaPredicted RBP20.83■□□□□ 0.93
SDF4-205ENST00000465727 FAM91A1Q658Y4 838 aa20.83■□□□□ 0.93
SDF4-205ENST00000465727 CDC42EP5Q6NZY7 148 aa20.83■□□□□ 0.93
SDF4-205ENST00000465727 DRAXINQ8NBI3 349 aaPredicted RBP20.83■□□□□ 0.93
SDF4-205ENST00000465727 ARHGEF1Q92888 912 aaKnown RBP20.83■□□□□ 0.93
SDF4-205ENST00000465727 TEKT3Q9BXF9 490 aa20.83■□□□□ 0.93
SDF4-205ENST00000465727 KANSL3Q9P2N6 904 aa20.83■□□□□ 0.93
SDF4-205ENST00000465727 POLLQ9UGP5 575 aa20.83■□□□□ 0.93
SDF4-205ENST00000465727 LIASO43766 372 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 GTF2H1P32780 548 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 GCNT1Q02742 428 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 CEP55Q53EZ4 464 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 CCDC62Q6P9F0 684 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 SKA1Q96BD8 255 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 ZNF577Q9BSK1 485 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 ARL8BQ9NVJ2 186 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 DDX43Q9NXZ2 648 aaKnown RBP20.82■□□□□ 0.92
SDF4-205ENST00000465727 HEY2Q9UBP5 337 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 SIPA1L1O43166 1804 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 A0A1W2PPM1 405 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 CFAP69A5D8W1 941 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 RNF8O76064 485 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 ADRB2P07550 413 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 PHBP35232 272 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 POLE2P56282 527 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 SNRNP35Q16560 246 aaKnown RBP20.82■□□□□ 0.92
SDF4-205ENST00000465727 HHIPL2Q6UWX4 724 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 TMEM179Q6ZVK1 233 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 USP37Q86T82 979 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 ZNF276Q8N554 614 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 PTPRN2Q92932 1015 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 MRPL47Q9HD33 250 aaKnown RBP20.82■□□□□ 0.92
SDF4-205ENST00000465727 RAB20Q9NX57 234 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 ANGPTL2Q9UKU9 493 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 NUMBLQ9Y6R0 609 aa20.82■□□□□ 0.92
SDF4-205ENST00000465727 F8W8V4 182 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 BBOX1O75936 387 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 NDUFB10O96000 172 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 NSFP46459 744 aaKnown RBP20.81■□□□□ 0.92
SDF4-205ENST00000465727 ARFIP2P53365 341 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 CDK16Q00536 496 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 LAMB3Q13751 1172 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 FOXB2Q5VYV0 432 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 SLC30A10Q6XR72 485 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 SIAH1Q8IUQ4 282 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 ZBED8Q8IZ13 594 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 ALLCQ8N6M5 410 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.81■□□□□ 0.922e-6■■■■□ 26.2
SDF4-205ENST00000465727 SMC1BQ8NDV3 1235 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 RFWD2Q8NHY2 731 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 TMC2Q8TDI7 906 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 RBM17Q96I25 401 aaKnown RBP20.81■□□□□ 0.92
SDF4-205ENST00000465727 GBP5Q96PP8 586 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 PPP1R12CQ9BZL4 782 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 COA1Q9GZY4 146 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 MANSC1Q9H8J5 431 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 DMAP1Q9NPF5 467 aaPredicted RBP20.81■□□□□ 0.92
SDF4-205ENST00000465727 DCTN4Q9UJW0 460 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 DRG1Q9Y295 367 aaKnown RBP20.81■□□□□ 0.92
SDF4-205ENST00000465727 BRWD3Q6RI45 1802 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 MYPNQ86TC9 1320 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 ZC3H11AO75152 810 aaKnown RBP eCLIP20.81■□□□□ 0.922e-6■□□□□ 8.9
SDF4-205ENST00000465727 ADRA1DP25100 572 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 FASTKD3Q14CZ7 662 aaKnown RBP20.81■□□□□ 0.92
SDF4-205ENST00000465727 LIN9Q5TKA1 542 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 HAUS6Q7Z4H7 955 aa20.81■□□□□ 0.92
SDF4-205ENST00000465727 UPF1Q92900 1129 aaKnown RBP eCLIP20.81■□□□□ 0.925e-9■■■■■ 30.1
SDF4-205ENST00000465727 PCDHB2Q9Y5E7 798 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms