RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 MRPS25P82663 173 aaKnown RBP19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 NNTQ13423 1086 aa19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 SMC1AQ14683 1233 aaKnown RBP19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 FSCN1Q16658 493 aaKnown RBP19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 NOTUMQ6P988 496 aa19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 CATSPER4Q7RTX7 472 aa19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 GSPT2Q8IYD1 628 aaKnown RBP19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 CAVIN3Q969G5 261 aa19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 ACBD3Q9H3P7 528 aa19.16■□□□□ 0.66
HLA-DQB1-201ENST00000374943 GOLGA6L10A0A0M3HER8 536 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 DUSP11O75319 330 aaKnown RBP19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 CALB1P05937 261 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 ITGA4P13612 1032 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 P4HA1P13674 534 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 BRD2P25440 801 aaKnown RBP19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 IRX5P78411 483 aaPredicted RBP19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 PAK2Q13177 524 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 SEL1L2Q5TEA6 688 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 MMS22LQ6ZRQ5 1243 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 TMEM35BQ8NCS4 154 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 EPB41L5Q9HCM4 733 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 NXF1Q9UBU9 619 aaKnown RBP19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 PCNTO95613 3336 aa19.15■□□□□ 0.66
HLA-DQB1-201ENST00000374943 A0A0U1RQG5 324 aaPredicted RBP19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 MYO1FO00160 1098 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 KPNA6O60684 536 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 PROSCO94903 275 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 NPTXRO95502 500 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 FGFR4P22455 802 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 EIF4BP23588 611 aaKnown RBP19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 MAN1A1P33908 653 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 RWDD2BP57060 319 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 RBP5P82980 135 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 PURAQ00577 322 aaKnown RBP19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 BEX3Q00994 111 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 GUCY2DQ02846 1103 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 TMEM62Q0P6H9 643 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 GPS2Q13227 327 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 ZNF211Q13398 564 aaPredicted RBP19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 MAMLD1Q13495 774 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 WDR72Q3MJ13 1102 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 MAATS1Q7Z4T9 603 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 CCDC26Q8TAB7 109 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 OSMRQ99650 979 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 DDX47Q9H0S4 455 aaKnown RBP19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 CDHR5Q9HBB8 845 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 PARVAQ9NVD7 372 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 DPP3Q9NY33 737 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 LCMT1Q9UIC8 334 aa19.14■□□□□ 0.66
HLA-DQB1-201ENST00000374943 C17orf102A2RUQ5 167 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 MED7O43513 233 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 GNAT1P11488 350 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 POLR2BP30876 1174 aaKnown RBP19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 TNNT3P45378 269 aaPredicted RBP19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 CPNE8Q86YQ8 564 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 NME8Q8N427 588 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 TTC39CQ8N584 583 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 DNAJB3Q8WWF6 145 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 TFAP2BQ92481 460 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 HPDLQ96IR7 371 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 SNX27Q96L92 541 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 SDCBP2Q9H190 292 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 LHX5Q9H2C1 402 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 HPCAL4Q9UM19 191 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 CEP83Q9Y592 693 aa19.14■□□□□ 0.65
HLA-DQB1-201ENST00000374943 TCRBV5S1A1TA0A578 114 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 TREHO43280 583 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 CILPO75339 1184 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 CYBAP13498 195 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 AARSP49588 968 aaKnown RBP eCLIP19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 RAD23BP54727 409 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 FCGRTP55899 365 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 LACTBP83111 547 aaPredicted RBP19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 CUL1Q13616 776 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 SNX17Q15036 470 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 ZNF394Q53GI3 561 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 TRPV1Q8NER1 839 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 CASKIN2Q8WXE0 1202 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 SEC14L1Q92503 715 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 KIF12Q96FN5 646 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 PLVAPQ9BX97 442 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 SMYD3Q9H7B4 428 aa19.13■□□□□ 0.65
HLA-DQB1-201ENST00000374943 ZSCAN5CA6NGD5 496 aaPredicted RBP19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 PYGMP11217 842 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 SSTR3P32745 418 aaPredicted RBP19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 RAP1GAPP47736 663 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 CARSP49589 748 aaKnown RBP19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 GJA9P57773 515 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 NKX3-2P78367 333 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 INCA1Q0VD86 236 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 LLGL2Q6P1M3 1020 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 C1orf131Q8NDD1 294 aaKnown RBP19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 WHAMMQ8TF30 809 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 TRIM7Q9C029 511 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 UPF3AQ9H1J1 476 aaKnown RBP19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 CREBZFQ9NS37 354 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 AGAP1Q9UPQ3 857 aa19.12■□□□□ 0.65
HLA-DQB1-201ENST00000374943 GINS2Q9Y248 185 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms