RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 CCDC151A5D8V7 595 aa15.19■□□□□ 0.02
C9orf3-202ENST00000297979 M0QZ92 97 aa15.19■□□□□ 0.02
C9orf3-202ENST00000297979 CEP104O60308 925 aa15.19■□□□□ 0.02
C9orf3-202ENST00000297979 RAP1GAPP47736 663 aa15.19■□□□□ 0.02
C9orf3-202ENST00000297979 MESDQ14696 234 aa15.19■□□□□ 0.02
C9orf3-202ENST00000297979 ACTRT1Q8TDG2 376 aa15.19■□□□□ 0.02
C9orf3-202ENST00000297979 HPDLQ96IR7 371 aa15.19■□□□□ 0.02
C9orf3-202ENST00000297979 CELF4Q9BZC1 486 aaKnown RBP15.19■□□□□ 0.02
C9orf3-202ENST00000297979 NXF3Q9H4D5 531 aaKnown RBP15.19■□□□□ 0.02
C9orf3-202ENST00000297979 TARSL2A2RTX5 802 aaKnown RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 TMEM110-MUSTN1A8MSY1 372 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 DDX3YO15523 660 aaKnown RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 STAU1O95793 577 aaKnown RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 SSTR3P32745 418 aaPredicted RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 GDF6Q6KF10 455 aaPredicted RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 PHF13Q86YI8 300 aaPredicted RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 PIK3R5Q8WYR1 880 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 RPS6KC1Q96S38 1066 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 SMYD3Q9H7B4 428 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 CYP3A43Q9HB55 503 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 RBM12Q9NTZ6 932 aaKnown RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 HES2Q9Y543 173 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 MIF4GDA9UHW6 222 aaKnown RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 LSM8O95777 96 aaKnown RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 MRPS6P82932 125 aaKnown RBP15.18■□□□□ 0.02
C9orf3-202ENST00000297979 USP38Q8NB14 1042 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 VCPIP1Q96JH7 1222 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 SDCBP2Q9H190 292 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 SRRDQ9UH36 339 aa15.18■□□□□ 0.02
C9orf3-202ENST00000297979 TRIP11Q15643 1979 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 RECQL4O94761 1208 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 RRM1P23921 792 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 HOXD10P28358 340 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 RNASE9P60153 205 aaKnown RBP15.17■□□□□ 0.02
C9orf3-202ENST00000297979 VSNL1P62760 191 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 FAM47CQ5HY64 1035 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 LIN9Q5TKA1 542 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 CC2D1AQ6P1N0 951 aaPredicted RBP15.17■□□□□ 0.02
C9orf3-202ENST00000297979 WDR93Q6P2C0 686 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 RSPH3Q86UC2 560 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 C11orf70Q9BRQ4 267 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 ZNF446Q9NWS9 450 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 ADAM22Q9P0K1 906 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 CNTN3Q9P232 1028 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 PGRMC1O00264 195 aaKnown RBP15.17■□□□□ 0.02
C9orf3-202ENST00000297979 TRPA1O75762 1119 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 ASGR1P07306 291 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 COMTP21964 271 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 CDH8P55286 799 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 C1QBPQ07021 282 aaKnown RBP15.17■□□□□ 0.02
C9orf3-202ENST00000297979 UBXN11Q5T124 520 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 RASGEF1CQ8N431 466 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 CD99L2Q8TCZ2 262 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 ZMAT2Q96NC0 199 aaKnown RBP15.17■□□□□ 0.02
C9orf3-202ENST00000297979 ZSWIM1Q9BR11 485 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.17■□□□□ 0.027e-7■■■□□ 15.2
C9orf3-202ENST00000297979 APOL6Q9BWW8 343 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 CXCL16Q9H2A7 254 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 PCDHGC3Q9UN70 934 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 TRPV2Q9Y5S1 764 aa15.17■□□□□ 0.02
C9orf3-202ENST00000297979 HMGCRP04035 888 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 PAEPP09466 180 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 MCM3P25205 808 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 CST5P28325 142 aaPredicted RBP15.16■□□□□ 0.02
C9orf3-202ENST00000297979 SSR1P43307 286 aaKnown RBP15.16■□□□□ 0.02
C9orf3-202ENST00000297979 TNNC1P63316 161 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 ALKAL1Q6UXT8 129 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 UBL4BQ8N7F7 174 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 KLHDC9Q8NEP7 349 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 BEST2Q8NFU1 509 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 ATL2Q8NHH9 583 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 TFAP2BQ92481 460 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 BTBD6Q96KE9 485 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 CARD9Q9H257 536 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 ARFGAP3Q9NP61 516 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 ANAPC7Q9UJX3 599 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 NOC2LQ9Y3T9 749 aaKnown RBP15.16■□□□□ 0.02
C9orf3-202ENST00000297979 CEP83Q9Y592 693 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 CDY2AQ9Y6F7 541 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 THSD7BQ9C0I4 1608 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 PDCD11Q14690 1871 aaKnown RBP15.16■□□□□ 0.02
C9orf3-202ENST00000297979 APLP1P51693 650 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 MYO1EQ12965 1108 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 ZBTB6Q15916 424 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 KCNA10Q16322 511 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 MMS22LQ6ZRQ5 1243 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 SERINC5Q86VE9 423 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 SESTD1Q86VW0 696 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 FAM228AQ86W67 206 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 TMEM35BQ8NCS4 154 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 ZNF518BQ9C0D4 1074 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 WNT8AQ9H1J5 351 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 FAM124BQ9H5Z6 455 aaPredicted RBP15.16■□□□□ 0.02
C9orf3-202ENST00000297979 MED7O43513 233 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 CILPO75339 1184 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 ERLIN1O75477 346 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 RPLP2P05387 115 aaKnown RBP15.16■□□□□ 0.02
C9orf3-202ENST00000297979 AKAP5P24588 427 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 RAD23BP54727 409 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 PTP4A2Q12974 167 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms