RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C YFL051CP43552 160 aa-0.03□□□□□ -2.41
NIP1YMR309C GET1P53192 235 aa-0.03□□□□□ -2.41
NIP1YMR309C YNL134CP53912 376 aaKnown RBP-0.03□□□□□ -2.41
NIP1YMR309C LAP3Q01532 483 aaKnown RBP RIP-Chip data-0.03□□□□□ -2.41not detected
NIP1YMR309C MET31Q03081 177 aa-0.03□□□□□ -2.41
NIP1YMR309C MED4Q12343 284 aa-0.03□□□□□ -2.41
NIP1YMR309C COA3Q3E7B2 85 aa-0.03□□□□□ -2.41
NIP1YMR309C YHR214C-EQ8TGK0 99 aa-0.03□□□□□ -2.41
NIP1YMR309C IKI3Q06706 1349 aaKnown RBP-0.04□□□□□ -2.42
NIP1YMR309C DUR1,2P32528 1835 aaKnown RBP-0.04□□□□□ -2.42
NIP1YMR309C SPO13P23624 291 aa-0.04□□□□□ -2.42
NIP1YMR309C SEC17P32602 292 aa-0.04□□□□□ -2.42
NIP1YMR309C RPT5P33297 434 aaKnown RBP-0.04□□□□□ -2.42
NIP1YMR309C NTF2P33331 125 aaKnown RBP-0.04□□□□□ -2.42
NIP1YMR309C RPB7P34087 171 aa-0.04□□□□□ -2.42
NIP1YMR309C MRPL15P36523 253 aa-0.04□□□□□ -2.42
NIP1YMR309C HPA3P39979 161 aa-0.04□□□□□ -2.42
NIP1YMR309C PRP11Q07350 266 aaPredicted RBP-0.04□□□□□ -2.42
NIP1YMR309C FYV12Q08559 129 aa-0.04□□□□□ -2.42
NIP1YMR309C FAS1P07149 2051 aaKnown RBP-0.04□□□□□ -2.42
NIP1YMR309C COX8P04039 78 aa-0.04□□□□□ -2.42
NIP1YMR309C SPT3P06844 337 aa-0.04□□□□□ -2.42
NIP1YMR309C YCR016WP25617 290 aaKnown RBP-0.04□□□□□ -2.42
NIP1YMR309C IDH1P28834 360 aaKnown RBP RIP-Chip data-0.04□□□□□ -2.42not detected
NIP1YMR309C RIB7P33312 244 aa-0.04□□□□□ -2.42
NIP1YMR309C MSN4P33749 630 aa-0.04□□□□□ -2.42
NIP1YMR309C YUH1P35127 236 aa-0.04□□□□□ -2.42
NIP1YMR309C YHL018WP38744 120 aaPredicted RBP-0.04□□□□□ -2.42
NIP1YMR309C LIA1P47120 325 aaKnown RBP-0.04□□□□□ -2.42
NIP1YMR309C NUP84P52891 726 aa-0.04□□□□□ -2.42
NIP1YMR309C RRN5Q02983 363 aa-0.04□□□□□ -2.42
NIP1YMR309C YMR295CQ03559 197 aa-0.04□□□□□ -2.42
NIP1YMR309C KAP95Q06142 861 aaKnown RBP-0.04□□□□□ -2.42
NIP1YMR309C DGA1Q08650 418 aa-0.04□□□□□ -2.42
NIP1YMR309C FIT2Q08906 153 aa-0.04□□□□□ -2.42
NIP1YMR309C YFR032C-BQ8TGU2 87 aa-0.04□□□□□ -2.42
NIP1YMR309C SEY1Q99287 776 aa-0.04□□□□□ -2.42
NIP1YMR309C RPL25P04456 142 aaKnown RBP-0.05□□□□□ -2.42
NIP1YMR309C POR1P04840 283 aaKnown RBP-0.05□□□□□ -2.42
NIP1YMR309C RPB3P16370 318 aaKnown RBP-0.05□□□□□ -2.42
NIP1YMR309C YCR090CP25654 182 aaKnown RBP-0.05□□□□□ -2.42
NIP1YMR309C UBC8P28263 218 aa-0.05□□□□□ -2.42
NIP1YMR309C ARO7P32178 256 aa-0.05□□□□□ -2.42
NIP1YMR309C SFK1P35735 353 aa-0.05□□□□□ -2.42
NIP1YMR309C AIM2P39721 246 aa-0.05□□□□□ -2.42
NIP1YMR309C FMC1P40491 155 aa-0.05□□□□□ -2.42
NIP1YMR309C BRR6P53062 197 aa-0.05□□□□□ -2.42
NIP1YMR309C ALG13P53178 202 aa-0.05□□□□□ -2.42
NIP1YMR309C YDR249CQ03787 373 aa-0.05□□□□□ -2.42
NIP1YMR309C HNT1Q04344 158 aaKnown RBP-0.05□□□□□ -2.42
NIP1YMR309C IRC23Q08416 157 aa-0.05□□□□□ -2.42
NIP1YMR309C YPR013CQ12145 317 aa-0.05□□□□□ -2.42
NIP1YMR309C MDM32Q12171 622 aa-0.05□□□□□ -2.42
NIP1YMR309C ATG31Q12421 196 aa-0.05□□□□□ -2.42
NIP1YMR309C SEN2P16658 377 aa-0.05□□□□□ -2.42
NIP1YMR309C ATP15P21306 62 aa-0.05□□□□□ -2.42
NIP1YMR309C TCA17P32613 152 aa-0.05□□□□□ -2.42
NIP1YMR309C GSP2P32836 220 aaKnown RBP-0.05□□□□□ -2.42
NIP1YMR309C PAN3P36102 679 aaPredicted RBP-0.05□□□□□ -2.42
NIP1YMR309C YHL037CP38733 133 aa-0.05□□□□□ -2.42
NIP1YMR309C ARP3P47117 449 aaKnown RBP-0.05□□□□□ -2.42
NIP1YMR309C AIM25P47140 327 aa-0.05□□□□□ -2.42
NIP1YMR309C MIC26P50087 233 aa-0.05□□□□□ -2.42
NIP1YMR309C SBH2P52871 88 aa-0.05□□□□□ -2.42
NIP1YMR309C MPC3P53311 146 aa-0.05□□□□□ -2.42
NIP1YMR309C PET117Q02771 107 aa-0.05□□□□□ -2.42
NIP1YMR309C YDR391CQ04170 232 aa-0.05□□□□□ -2.42
NIP1YMR309C FIT1Q04433 528 aa-0.05□□□□□ -2.42
NIP1YMR309C ODC2Q99297 307 aa-0.05□□□□□ -2.42
NIP1YMR309C GCN3P14741 305 aa-0.06□□□□□ -2.42
NIP1YMR309C MAG1P22134 296 aaKnown RBP-0.06□□□□□ -2.42
NIP1YMR309C ALB1P47019 175 aaPredicted RBP-0.06□□□□□ -2.42
NIP1YMR309C YGR050CP53231 118 aa-0.06□□□□□ -2.42
NIP1YMR309C YMR099CQ03161 297 aaKnown RBP-0.06□□□□□ -2.42
NIP1YMR309C VPS71Q03433 280 aa-0.06□□□□□ -2.42
NIP1YMR309C BNA7Q04066 261 aa-0.06□□□□□ -2.42
NIP1YMR309C RRT8Q08219 342 aa-0.06□□□□□ -2.42
NIP1YMR309C YPR203WQ08994 102 aa-0.06□□□□□ -2.42
NIP1YMR309C CCW12Q12127 133 aa-0.06□□□□□ -2.42
NIP1YMR309C YLR422WQ06409 1932 aa-0.06□□□□□ -2.42
NIP1YMR309C MATALPHA1P0CY06 175 aa-0.06□□□□□ -2.42
NIP1YMR309C HMLALPHA1P0CY07 175 aa-0.06□□□□□ -2.42
NIP1YMR309C YMR31P19955 123 aa-0.06□□□□□ -2.42
NIP1YMR309C RPO26P20435 155 aa-0.06□□□□□ -2.42
NIP1YMR309C MIC12P38341 106 aa-0.06□□□□□ -2.42
NIP1YMR309C TRM5P38793 499 aa-0.06□□□□□ -2.42
NIP1YMR309C HMF1P40037 129 aaKnown RBP-0.06□□□□□ -2.42
NIP1YMR309C DCV1P43595 202 aa-0.06□□□□□ -2.42
NIP1YMR309C UBC12P52491 188 aa-0.06□□□□□ -2.42
NIP1YMR309C DAD4P69851 72 aa-0.06□□□□□ -2.42
NIP1YMR309C FUS2Q05670 677 aa-0.06□□□□□ -2.42
NIP1YMR309C ABP140Q08641 628 aaKnown RBP-0.06□□□□□ -2.42
NIP1YMR309C YPK2P18961 677 aa-0.07□□□□□ -2.42
NIP1YMR309C RPL24BP24000 155 aaKnown RBP-0.07□□□□□ -2.42
NIP1YMR309C VMA6P32366 345 aaKnown RBP-0.07□□□□□ -2.42
NIP1YMR309C YBR242WP38331 238 aa-0.07□□□□□ -2.42
NIP1YMR309C RPC17P47076 161 aa-0.07□□□□□ -2.42
NIP1YMR309C YJR015WP47090 510 aa-0.07□□□□□ -2.42
NIP1YMR309C ADO1P47143 340 aaKnown RBP-0.07□□□□□ -2.42
NIP1YMR309C PDR17P53844 350 aa-0.07□□□□□ -2.42
Retrieved 100 of 5,963 RNA–protein pairs in 27.6 ms