RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W YMD8Q03697 442 aa4.01□□□□□ -1.77
PRP40YKL012W FIS1P40515 155 aa4□□□□□ -1.77
PRP40YKL012W ERG10P41338 398 aaKnown RBP4□□□□□ -1.77
PRP40YKL012W YJR056CP47115 236 aa4□□□□□ -1.77
PRP40YKL012W YNG1Q08465 219 aa4□□□□□ -1.77
PRP40YKL012W FCY2P17064 533 aa3.99□□□□□ -1.77
PRP40YKL012W TCA17P32613 152 aa3.99□□□□□ -1.77
PRP40YKL012W IRC22P40006 225 aa3.99□□□□□ -1.77
PRP40YKL012W YJL016WP47072 561 aa3.99□□□□□ -1.77
PRP40YKL012W YJR141WP47172 347 aaPredicted RBP3.99□□□□□ -1.77
PRP40YKL012W YDR114CQ04597 100 aa3.99□□□□□ -1.77
PRP40YKL012W RSF2P46974 1380 aa3.99□□□□□ -1.77
PRP40YKL012W FMT1P32785 401 aa3.99□□□□□ -1.77
PRP40YKL012W YBR063CP38083 404 aa3.99□□□□□ -1.77
PRP40YKL012W ECM33P38248 429 aaKnown RBP3.99□□□□□ -1.77
PRP40YKL012W COG3P40094 801 aa3.99□□□□□ -1.77
PRP40YKL012W GIM5Q04493 163 aa3.99□□□□□ -1.77
PRP40YKL012W SML1Q04964 104 aa3.99□□□□□ -1.77
PRP40YKL012W YDL012CQ12489 107 aa3.99□□□□□ -1.77
PRP40YKL012W ARC15P40518 154 aaRIP-Chip data3.98□□□□□ -1.77not detected
PRP40YKL012W ECM4P36156 370 aa3.97□□□□□ -1.77
PRP40YKL012W YER084WP40057 128 aa3.97□□□□□ -1.77
PRP40YKL012W HYR1P40581 163 aaKnown RBP3.97□□□□□ -1.77
PRP40YKL012W PIR5P46999 287 aa3.97□□□□□ -1.77
PRP40YKL012W LSM7P53905 115 aaKnown RBP3.97□□□□□ -1.77
PRP40YKL012W LPP1Q04396 274 aa3.97□□□□□ -1.77
PRP40YKL012W YPR195CQ06594 109 aa3.97□□□□□ -1.77
PRP40YKL012W FEX1Q08913 375 aa3.97□□□□□ -1.77
PRP40YKL012W FEX2Q08991 375 aa3.97□□□□□ -1.77
PRP40YKL012W Q0255P03881 472 aa3.97□□□□□ -1.77
PRP40YKL012W ADH3P07246 375 aaKnown RBP3.97□□□□□ -1.77
PRP40YKL012W KSS1P14681 368 aa3.97□□□□□ -1.77
PRP40YKL012W RME1P32338 300 aaKnown RBP3.97□□□□□ -1.77
PRP40YKL012W YHR125WP38831 101 aa3.97□□□□□ -1.77
PRP40YKL012W YAR068WP39564 161 aa3.97□□□□□ -1.77
PRP40YKL012W ATG39Q06159 398 aa3.97□□□□□ -1.77
PRP40YKL012W GRE1Q08969 168 aa3.97□□□□□ -1.77
PRP40YKL012W MDM32Q12171 622 aa3.97□□□□□ -1.77
PRP40YKL012W USB1Q12208 290 aaKnown RBP3.97□□□□□ -1.77
PRP40YKL012W CMC2Q3E7A4 109 aa3.97□□□□□ -1.77
PRP40YKL012W PEX12Q04370 399 aa3.96□□□□□ -1.78
PRP40YKL012W YKL068W-AQ3E826 78 aa3.96□□□□□ -1.78
PRP40YKL012W SAS5Q99314 248 aa3.96□□□□□ -1.78
PRP40YKL012W CDC7P06243 507 aa3.95□□□□□ -1.78
PRP40YKL012W TIF34P40217 347 aaKnown RBP3.95□□□□□ -1.78
PRP40YKL012W SSU72P53538 206 aaPredicted RBP3.95□□□□□ -1.78
PRP40YKL012W YNL010WP53981 241 aaKnown RBP3.95□□□□□ -1.78
PRP40YKL012W SMD2Q06217 110 aaKnown RBP3.95□□□□□ -1.78
PRP40YKL012W YET3Q07451 203 aa3.95□□□□□ -1.78
PRP40YKL012W TDA8Q6B2U8 126 aa3.95□□□□□ -1.78
PRP40YKL012W MRS1P07266 363 aa3.94□□□□□ -1.78
PRP40YKL012W YPR170W-BP0C5R9 85 aa3.94□□□□□ -1.78
PRP40YKL012W RPL35AP0CX84 120 aaKnown RBP3.94□□□□□ -1.78
PRP40YKL012W RPL35BP0CX85 120 aaKnown RBP3.94□□□□□ -1.78
PRP40YKL012W SNF6P18888 332 aa3.94□□□□□ -1.78
PRP40YKL012W ARC19P33204 171 aaKnown RBP3.94□□□□□ -1.78
PRP40YKL012W CAF4P36130 643 aa3.94□□□□□ -1.78
PRP40YKL012W SHG1P38337 142 aa3.94□□□□□ -1.78
PRP40YKL012W POG1P40473 351 aa3.94□□□□□ -1.78
PRP40YKL012W YGR050CP53231 118 aa3.94□□□□□ -1.78
PRP40YKL012W YHR214C-EQ8TGK0 99 aa3.94□□□□□ -1.78
PRP40YKL012W PDR18P53756 1333 aa3.94□□□□□ -1.78
PRP40YKL012W RPL25P04456 142 aaKnown RBP3.94□□□□□ -1.78
PRP40YKL012W RMD6P39975 231 aa3.94□□□□□ -1.78
PRP40YKL012W YER188WP40103 239 aa3.94□□□□□ -1.78
PRP40YKL012W AIM25P47140 327 aa3.94□□□□□ -1.78
PRP40YKL012W DPM1P14020 267 aaKnown RBP3.93□□□□□ -1.78
PRP40YKL012W RSA4P25382 515 aaKnown RBP3.93□□□□□ -1.78
PRP40YKL012W PTM1P32857 523 aa3.93□□□□□ -1.78
PRP40YKL012W GGA1Q06336 557 aa3.93□□□□□ -1.78
PRP40YKL012W FBA1P14540 359 aaKnown RBP3.92□□□□□ -1.78
PRP40YKL012W CCA1P21269 546 aa3.92□□□□□ -1.78
PRP40YKL012W CAB4P53332 305 aa3.92□□□□□ -1.78
PRP40YKL012W FUS2Q05670 677 aa3.92□□□□□ -1.78
PRP40YKL012W YOL160WQ08321 113 aa3.92□□□□□ -1.78
PRP40YKL012W KRE1P17260 313 aa3.91□□□□□ -1.78
PRP40YKL012W VPS51P36116 164 aa3.91□□□□□ -1.78
PRP40YKL012W YKR032WP36127 104 aa3.91□□□□□ -1.78
PRP40YKL012W RTC4P53850 401 aa3.91□□□□□ -1.78
PRP40YKL012W COG5P53951 403 aa3.91□□□□□ -1.78
PRP40YKL012W SNO1Q03144 224 aa3.91□□□□□ -1.78
PRP40YKL012W ARO80Q04052 950 aa3.91□□□□□ -1.78
PRP40YKL012W NOC4Q06512 552 aaPredicted RBP3.91□□□□□ -1.78
PRP40YKL012W RPL9AP05738 191 aaKnown RBP3.91□□□□□ -1.78
PRP40YKL012W ATG22P25568 528 aa3.91□□□□□ -1.78
PRP40YKL012W CTR2P38865 189 aa3.91□□□□□ -1.78
PRP40YKL012W SMD3P43321 101 aaKnown RBP3.91□□□□□ -1.78
PRP40YKL012W RPL9BP51401 191 aaKnown RBP3.91□□□□□ -1.78
PRP40YKL012W YGL088WP53151 121 aa3.91□□□□□ -1.78
PRP40YKL012W YGR026WP53217 278 aa3.91□□□□□ -1.78
PRP40YKL012W YIP3P53633 176 aa3.91□□□□□ -1.78
PRP40YKL012W GAS3Q03655 524 aa3.91□□□□□ -1.78
PRP40YKL012W YPL225WQ08971 146 aaKnown RBP3.91□□□□□ -1.78
PRP40YKL012W CCH1P50077 2039 aa3.9□□□□□ -1.78
PRP40YKL012W MAG1P22134 296 aaKnown RBP3.9□□□□□ -1.79
PRP40YKL012W POP4P38336 279 aa3.9□□□□□ -1.79
PRP40YKL012W NRK1P53915 240 aa3.9□□□□□ -1.79
PRP40YKL012W PSF1Q12488 208 aa3.9□□□□□ -1.79
PRP40YKL012W YHR032W-AP0C5N6 59 aa3.89□□□□□ -1.79
PRP40YKL012W HMF1P40037 129 aaKnown RBP3.89□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 151.1 ms