RNA–Protein interactions for RNA: YGR143W

SKN1, Transcript of Protein involved in sphingolipid biosynthesis, yeast

Gene SKN1, Length 2,316 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKN1	YGR143W	PRE5	P40302	234 aa	Known RBP	5.21	□□□□□ -1.58
SKN1	YGR143W	CAT5	P41735	233 aa		5.21	□□□□□ -1.58
SKN1	YGR143W	YJR124C	P47159	448 aa		5.21	□□□□□ -1.58
SKN1	YGR143W	ALG13	P53178	202 aa		5.21	□□□□□ -1.58
SKN1	YGR143W	PIR3	Q03180	325 aa		5.21	□□□□□ -1.58
SKN1	YGR143W	TFB5	Q3E7C1	72 aa	Predicted RBP	5.21	□□□□□ -1.58
SKN1	YGR143W	POP5	P28005	173 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	OAC1	P32332	324 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	MRPS9	P38120	278 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	RPS26A	P39938	119 aa	Known RBP	5.2	□□□□□ -1.58
SKN1	YGR143W	RPS26B	P39939	119 aa	Known RBP	5.2	□□□□□ -1.58
SKN1	YGR143W	SPC25	P40014	221 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	AYR1	P40471	297 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	AIM25	P47140	327 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	MSS11	Q03825	758 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	FMP27	Q06179	2628 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	HTA2	P04912	132 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	ATG12	P38316	186 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	SAS2	P40963	338 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	YJR115W	P47152	169 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	NUP53	Q03790	475 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	HRI1	Q05905	244 aa	Known RBP	5.2	□□□□□ -1.58
SKN1	YGR143W	PLB3	Q08108	686 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	PRM3	Q08931	133 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	YLR049C	Q12110	428 aa		5.2	□□□□□ -1.58
SKN1	YGR143W	RAS1	P01119	309 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	PAU19	P0CE85	124 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	PAU21	P0CE86	164 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	PAU22	P0CE87	164 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	CDC43	P18898	376 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	HYP2	P23301	157 aa	Known RBP	5.19	□□□□□ -1.58
SKN1	YGR143W	PAU3	P25610	124 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	RTC2	P38279	296 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	NSA2	P40078	261 aa	Known RBP	5.19	□□□□□ -1.58
SKN1	YGR143W	YNL198C	P40166	100 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	ERG26	P53199	349 aa	Known RBP	5.19	□□□□□ -1.58
SKN1	YGR143W	DUG3	P53871	357 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	RHO5	P53879	331 aa	Known RBP	5.19	□□□□□ -1.58
SKN1	YGR143W	YPR114W	Q06107	315 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	YDL157C	Q12082	118 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	ERV2	Q12284	196 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	YKL187C	P34231	750 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	UBC11	P52492	156 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	CTR3	Q06686	241 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	RPL7B	Q12213	244 aa	Known RBP	5.19	□□□□□ -1.58
SKN1	YGR143W	ORT1	Q12375	292 aa		5.19	□□□□□ -1.58
SKN1	YGR143W	HMRA1	P0CY11	126 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	YBR090C	P38253	122 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	VBA2	P38358	474 aa	Known RBP	5.18	□□□□□ -1.58
SKN1	YGR143W	TRR2	P38816	342 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	MRPL49	P40858	161 aa	Predicted RBP	5.18	□□□□□ -1.58
SKN1	YGR143W	MEP2	P41948	499 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	XPT1	P47165	209 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	BNS1	P50084	137 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	RMD9	P53140	646 aa	Known RBP	5.18	□□□□□ -1.58
SKN1	YGR143W	PRM8	P53174	237 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	BUD9	P53226	547 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	VHT1	P53241	593 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	CDC14	Q00684	551 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	YMR320W	Q04897	101 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	YLR118C	Q12354	227 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	BEM2	P39960	2167 aa	Known RBP	5.18	□□□□□ -1.58
SKN1	YGR143W	SAM35	P14693	329 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	DCW1	P36091	449 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	IRC22	P40006	225 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	SDP1	P40479	209 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	SNO3	P43544	222 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	CIN2	P46670	268 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	ATG27	P46989	271 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	HSV2	P50079	448 aa	Predicted RBP	5.18	□□□□□ -1.58
SKN1	YGR143W	MTL1	P53214	551 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	YNR040W	P53736	256 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	SNO2	P53823	222 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	MHF2	Q3E829	80 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	YPL229W	Q99395	206 aa		5.18	□□□□□ -1.58
SKN1	YGR143W	RPL40A	P0CH08	128 aa	Known RBP	5.17	□□□□□ -1.58
SKN1	YGR143W	RPL40B	P0CH09	128 aa	Known RBP	5.17	□□□□□ -1.58
SKN1	YGR143W	YMR31	P19955	123 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	YSR3	P23501	404 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	YIH1	P25637	258 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	GAR1	P28007	205 aa	Known RBP	5.17	□□□□□ -1.58
SKN1	YGR143W	ZRT1	P32804	376 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	SLM6	P38343	150 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	RPS20	P38701	121 aa	Known RBP	5.17	□□□□□ -1.58
SKN1	YGR143W	HTD2	P38790	280 aa	Known RBP	5.17	□□□□□ -1.58
SKN1	YGR143W	TTI2	P47168	421 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	WSC2	P53832	503 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	EFM6	P53970	246 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	GAS3	Q03655	524 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	SNO4	Q04902	237 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	HSP32	Q08992	237 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	RPL12A	P0CX53	165 aa	Known RBP	5.17	□□□□□ -1.58
SKN1	YGR143W	RPL12B	P0CX54	165 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	YKL107W	P34251	309 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	ASC1	P38011	319 aa	Known RBP	5.17	□□□□□ -1.58
SKN1	YGR143W	MIX23	P38162	196 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	ECM33	P38248	429 aa	Known RBP	5.17	□□□□□ -1.58
SKN1	YGR143W	YFR020W	P43600	232 aa		5.17	□□□□□ -1.58
SKN1	YGR143W	SMM1	P53720	384 aa	Known RBP	5.17	□□□□□ -1.58
SKN1	YGR143W	PDR17	P53844	350 aa		5.17	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 40.5 ms