RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W ERG25P53045 309 aa2.09□□□□□ -2.07
UPF3YGR072W HNT1Q04344 158 aaKnown RBP2.09□□□□□ -2.07
UPF3YGR072W NOC4Q06512 552 aaPredicted RBP2.09□□□□□ -2.07
UPF3YGR072W USB1Q12208 290 aaKnown RBP2.09□□□□□ -2.07
UPF3YGR072W CMC2Q3E7A4 109 aa2.09□□□□□ -2.07
UPF3YGR072W CNB1P25296 175 aa2.08□□□□□ -2.08
UPF3YGR072W MEI4P29467 408 aa2.08□□□□□ -2.08
UPF3YGR072W UMP1P38293 148 aa2.08□□□□□ -2.08
UPF3YGR072W YHR180WP38868 163 aa2.08□□□□□ -2.08
UPF3YGR072W GVP36P40531 326 aaKnown RBP2.08□□□□□ -2.08
UPF3YGR072W RPL33BP41056 107 aaKnown RBP2.08□□□□□ -2.08
UPF3YGR072W PRM10P42946 383 aa2.08□□□□□ -2.08
UPF3YGR072W NRK1P53915 240 aa2.08□□□□□ -2.08
UPF3YGR072W RGM1Q00453 211 aa2.08□□□□□ -2.08
UPF3YGR072W MRPS8Q03799 155 aa2.08□□□□□ -2.08
UPF3YGR072W ARO80Q04052 950 aa2.08□□□□□ -2.08
UPF3YGR072W GIM5Q04493 163 aa2.08□□□□□ -2.08
UPF3YGR072W MEU1Q07938 337 aaKnown RBP RIP-Chip data2.08□□□□□ -2.08not detected
UPF3YGR072W YLR031WQ07978 186 aa2.08□□□□□ -2.08
UPF3YGR072W YCR090CP25654 182 aaKnown RBP2.07□□□□□ -2.08
UPF3YGR072W TRR1P29509 319 aaKnown RBP2.07□□□□□ -2.08
UPF3YGR072W YET1P35723 206 aa2.07□□□□□ -2.08
UPF3YGR072W PHO88P38264 188 aaPredicted RBP2.07□□□□□ -2.08
UPF3YGR072W YNL184CP53876 108 aa2.07□□□□□ -2.08
UPF3YGR072W SNO1Q03144 224 aa2.07□□□□□ -2.08
UPF3YGR072W CGI121Q03705 181 aaKnown RBP2.07□□□□□ -2.08
UPF3YGR072W MGT1P26188 188 aa2.06□□□□□ -2.08
UPF3YGR072W SRP14P38985 146 aa2.06□□□□□ -2.08
UPF3YGR072W TIR3P40552 269 aa2.06□□□□□ -2.08
UPF3YGR072W ERG10P41338 398 aaKnown RBP2.06□□□□□ -2.08
UPF3YGR072W YNR062CP53748 327 aa2.06□□□□□ -2.08
UPF3YGR072W SPG3Q04398 127 aaPredicted RBP2.06□□□□□ -2.08
UPF3YGR072W GRX8Q05926 109 aa2.06□□□□□ -2.08
UPF3YGR072W GCY1P14065 312 aaKnown RBP RIP-Chip data2.05□□□□□ -2.08not detected
UPF3YGR072W PET9P18239 318 aaKnown RBP2.05□□□□□ -2.08
UPF3YGR072W SCL1P21243 252 aaKnown RBP2.05□□□□□ -2.08
UPF3YGR072W YBR285WP38354 144 aa2.05□□□□□ -2.08
UPF3YGR072W FMP32P43557 207 aa2.05□□□□□ -2.08
UPF3YGR072W TMA22P47089 198 aaPredicted RBP2.05□□□□□ -2.08
UPF3YGR072W YDR274CP87283 123 aa2.05□□□□□ -2.08
UPF3YGR072W DGA1Q08650 418 aa2.05□□□□□ -2.08
UPF3YGR072W YPR014CQ6B0W2 109 aa2.05□□□□□ -2.08
UPF3YGR072W ATP15P21306 62 aa2.04□□□□□ -2.08
UPF3YGR072W SVP26P38869 228 aa2.04□□□□□ -2.08
UPF3YGR072W SKI6P46948 246 aaPredicted RBP2.04□□□□□ -2.08
UPF3YGR072W ARP3P47117 449 aaKnown RBP2.04□□□□□ -2.08
UPF3YGR072W EAF6P47128 113 aa2.04□□□□□ -2.08
UPF3YGR072W UBC12P52491 188 aa2.04□□□□□ -2.08
UPF3YGR072W DOC1P53068 250 aa2.04□□□□□ -2.08
UPF3YGR072W ARO8P53090 500 aaKnown RBP2.04□□□□□ -2.08
UPF3YGR072W AIM34Q03673 198 aa2.04□□□□□ -2.08
UPF3YGR072W DYN3Q04949 312 aa2.04□□□□□ -2.08
UPF3YGR072W RPS24AP0CX31 135 aaKnown RBP2.03□□□□□ -2.08
UPF3YGR072W RPS24BP0CX32 135 aaKnown RBP2.03□□□□□ -2.08
UPF3YGR072W SEC14P24280 304 aaKnown RBP2.03□□□□□ -2.08
UPF3YGR072W ECM4P36156 370 aa2.03□□□□□ -2.08
UPF3YGR072W YHR022CP38763 256 aa2.03□□□□□ -2.08
UPF3YGR072W AVT2P39981 480 aa2.03□□□□□ -2.08
UPF3YGR072W VTC1P40046 129 aaRIP-Chip data2.03□□□□□ -2.08not detected
UPF3YGR072W YNL217WP40152 326 aa2.03□□□□□ -2.08
UPF3YGR072W JAC1P53193 184 aa2.03□□□□□ -2.08
UPF3YGR072W YIP3P53633 176 aa2.03□□□□□ -2.08
UPF3YGR072W PLP1Q04004 230 aa2.03□□□□□ -2.08
UPF3YGR072W FSF1Q12029 327 aaKnown RBP2.03□□□□□ -2.08
UPF3YGR072W BOL1Q3E793 110 aa2.03□□□□□ -2.08
UPF3YGR072W ODC2Q99297 307 aa2.03□□□□□ -2.08
UPF3YGR072W YIL177CP40434 1758 aa2.03□□□□□ -2.09
UPF3YGR072W YJL225CP40889 1758 aa2.03□□□□□ -2.09
UPF3YGR072W CPA1P07258 411 aaKnown RBP2.02□□□□□ -2.09
UPF3YGR072W RPL35AP0CX84 120 aaKnown RBP2.02□□□□□ -2.09
UPF3YGR072W RPL35BP0CX85 120 aaKnown RBP2.02□□□□□ -2.09
UPF3YGR072W AHC2P25649 128 aa2.02□□□□□ -2.09
UPF3YGR072W OCH1P31755 480 aa2.02□□□□□ -2.09
UPF3YGR072W SHE2P36068 246 aaKnown RBP RIP-Chip data2.02□□□□□ -2.09not detected
UPF3YGR072W LSM4P40070 187 aaKnown RBP2.02□□□□□ -2.09
UPF3YGR072W YER134CP40081 178 aa2.02□□□□□ -2.09
UPF3YGR072W SER2P42941 309 aa2.02□□□□□ -2.09
UPF3YGR072W TDA4P47153 279 aa2.02□□□□□ -2.09
UPF3YGR072W DAN1P47178 298 aa2.02□□□□□ -2.09
UPF3YGR072W YLR460CP54007 376 aa2.02□□□□□ -2.09
UPF3YGR072W CYT2Q00873 224 aa2.02□□□□□ -2.09
UPF3YGR072W NUP49Q02199 472 aa2.02□□□□□ -2.09
UPF3YGR072W YMR315WQ04869 349 aaKnown RBP2.02□□□□□ -2.09
UPF3YGR072W GRE1Q08969 168 aa2.02□□□□□ -2.09
UPF3YGR072W NRG2P38082 220 aa2.01□□□□□ -2.09
UPF3YGR072W YBR209WP38311 105 aa2.01□□□□□ -2.09
UPF3YGR072W DSE2P38844 325 aa2.01□□□□□ -2.09
UPF3YGR072W YEA4P40004 342 aa2.01□□□□□ -2.09
UPF3YGR072W AGE2P40529 298 aa2.01□□□□□ -2.09
UPF3YGR072W SAY1P53324 424 aa2.01□□□□□ -2.09
UPF3YGR072W SHH4Q06236 168 aa2.01□□□□□ -2.09
UPF3YGR072W YLR050CQ12155 161 aaKnown RBP2.01□□□□□ -2.09
UPF3YGR072W MPD1Q12404 318 aaKnown RBP2.01□□□□□ -2.09
UPF3YGR072W MDH2P22133 377 aa2□□□□□ -2.09
UPF3YGR072W KDX1P36005 433 aa2□□□□□ -2.09
UPF3YGR072W PAN3P36102 679 aaPredicted RBP2□□□□□ -2.09
UPF3YGR072W OPY1P38271 328 aa2□□□□□ -2.09
UPF3YGR072W YJR111CP47148 283 aaKnown RBP2□□□□□ -2.09
UPF3YGR072W BOL2P53082 120 aa2□□□□□ -2.09
UPF3YGR072W YNL247WP53852 767 aaKnown RBP2□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 87.5 ms