RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	NUM1	Q00402	2748 aa		11.73	□□□□□ -0.53
DEP1	YAL013W	ATP14	Q12349	124 aa		11.73	□□□□□ -0.53
DEP1	YAL013W	GDH1	P07262	454 aa	Known RBP	11.72	□□□□□ -0.53
DEP1	YAL013W	ATP10	P18496	279 aa		11.72	□□□□□ -0.53
DEP1	YAL013W	YFL015C	P43578	164 aa		11.72	□□□□□ -0.53
DEP1	YAL013W	SRB7	P47822	140 aa		11.72	□□□□□ -0.53
DEP1	YAL013W	YDR415C	Q04033	374 aa	Predicted RBP	11.72	□□□□□ -0.53
DEP1	YAL013W	YMR31	P19955	123 aa		11.71	□□□□□ -0.53
DEP1	YAL013W	YKL162C	P36052	402 aa		11.71	□□□□□ -0.53
DEP1	YAL013W	CUE1	P38428	203 aa		11.71	□□□□□ -0.53
DEP1	YAL013W	LSM12	P38828	187 aa	Known RBP	11.71	□□□□□ -0.53
DEP1	YAL013W	PKP2	P53170	491 aa		11.71	□□□□□ -0.53
DEP1	YAL013W	INN1	P53901	409 aa		11.71	□□□□□ -0.53
DEP1	YAL013W	YFH1	Q07540	174 aa		11.71	□□□□□ -0.53
DEP1	YAL013W	YCL048W-A	Q2V2Q2	79 aa		11.71	□□□□□ -0.53
DEP1	YAL013W	COA2	Q3E823	68 aa		11.71	□□□□□ -0.53
DEP1	YAL013W	SLM6	P38343	150 aa		11.7	□□□□□ -0.54
DEP1	YAL013W	RFC2	P40348	353 aa		11.7	□□□□□ -0.54
DEP1	YAL013W	YJL118W	P47022	219 aa		11.7	□□□□□ -0.54
DEP1	YAL013W	BUL1	P48524	976 aa		11.7	□□□□□ -0.54
DEP1	YAL013W	WSC2	P53832	503 aa		11.7	□□□□□ -0.54
DEP1	YAL013W	TMC1	Q08422	150 aa	Predicted RBP	11.7	□□□□□ -0.54
DEP1	YAL013W	ATG5	Q12380	294 aa		11.7	□□□□□ -0.54
DEP1	YAL013W	SOR1	P35497	357 aa	Known RBP	11.69	□□□□□ -0.54
DEP1	YAL013W	AIR1	P40507	360 aa	Known RBP	11.69	□□□□□ -0.54
DEP1	YAL013W	SMM1	P53720	384 aa	Known RBP	11.69	□□□□□ -0.54
DEP1	YAL013W	TIM44	Q01852	431 aa		11.69	□□□□□ -0.54
DEP1	YAL013W	YMR082C	Q04276	118 aa		11.69	□□□□□ -0.54
DEP1	YAL013W	SOR2	Q07786	357 aa		11.69	□□□□□ -0.54
DEP1	YAL013W	UBI4	P0CG63	381 aa	Known RBP	11.68	□□□□□ -0.54
DEP1	YAL013W	ERV1	P27882	189 aa		11.68	□□□□□ -0.54
DEP1	YAL013W	GPI18	P38211	433 aa		11.68	□□□□□ -0.54
DEP1	YAL013W	YNR064C	P53750	290 aa		11.68	□□□□□ -0.54
DEP1	YAL013W	HOF1	Q05080	669 aa		11.68	□□□□□ -0.54
DEP1	YAL013W	AIM45	Q12480	344 aa	Known RBP	11.68	□□□□□ -0.54
DEP1	YAL013W	VPS63	O13549	108 aa		11.67	□□□□□ -0.54
DEP1	YAL013W	YEA4	P40004	342 aa		11.67	□□□□□ -0.54
DEP1	YAL013W	YIL012W	P40551	113 aa		11.67	□□□□□ -0.54
DEP1	YAL013W	NCA3	P46955	337 aa		11.67	□□□□□ -0.54
DEP1	YAL013W	TIM10	P87108	93 aa		11.67	□□□□□ -0.54
DEP1	YAL013W	YPL264C	Q08980	353 aa		11.67	□□□□□ -0.54
DEP1	YAL013W	ARP3	P47117	449 aa	Known RBP	11.66	□□□□□ -0.54
DEP1	YAL013W	PHO23	P50947	330 aa		11.66	□□□□□ -0.54
DEP1	YAL013W	LPP1	Q04396	274 aa		11.66	□□□□□ -0.54
DEP1	YAL013W	RPP1A	P05318	106 aa	Predicted RBP	11.65	□□□□□ -0.54
DEP1	YAL013W	IES6	P32617	166 aa		11.65	□□□□□ -0.54
DEP1	YAL013W	ECM31	P38122	312 aa		11.65	□□□□□ -0.54
DEP1	YAL013W	YHR138C	P38841	114 aa	Predicted RBP	11.65	□□□□□ -0.54
DEP1	YAL013W	SUT1	P53032	299 aa	Known RBP	11.65	□□□□□ -0.54
DEP1	YAL013W	RRP15	Q06511	250 aa	Predicted RBP	11.65	□□□□□ -0.54
DEP1	YAL013W	YPD1	Q07688	167 aa		11.65	□□□□□ -0.54
DEP1	YAL013W	FCF2	Q12035	217 aa	Predicted RBP	11.65	□□□□□ -0.54
DEP1	YAL013W	YDL009C	Q12210	107 aa		11.65	□□□□□ -0.54
DEP1	YAL013W	SIP1	P32578	815 aa		11.64	□□□□□ -0.55
DEP1	YAL013W	YIR020C	P40575	100 aa		11.64	□□□□□ -0.55
DEP1	YAL013W	YMR090W	Q04304	227 aa	Known RBP	11.64	□□□□□ -0.55
DEP1	YAL013W	YCR025C	P25352	136 aa		11.63	□□□□□ -0.55
DEP1	YAL013W	ADH5	P38113	351 aa	Known RBP	11.63	□□□□□ -0.55
DEP1	YAL013W	ALG14	P38242	237 aa		11.63	□□□□□ -0.55
DEP1	YAL013W	YGR050C	P53231	118 aa		11.63	□□□□□ -0.55
DEP1	YAL013W	YHR213W-A	Q8TGT4	77 aa		11.63	□□□□□ -0.55
DEP1	YAL013W	YDR157W	A0A023PZE8	133 aa		11.62	□□□□□ -0.55
DEP1	YAL013W	RPL9A	P05738	191 aa	Known RBP	11.62	□□□□□ -0.55
DEP1	YAL013W	CBT1	P36038	271 aa	Predicted RBP	11.62	□□□□□ -0.55
DEP1	YAL013W	APJ1	P53940	528 aa		11.62	□□□□□ -0.55
DEP1	YAL013W	ODC1	Q03028	310 aa		11.62	□□□□□ -0.55
DEP1	YAL013W	FSH2	Q05015	223 aa		11.62	□□□□□ -0.55
DEP1	YAL013W	SPO24	Q3E752	67 aa		11.62	□□□□□ -0.55
DEP1	YAL013W	YOS1	Q3E834	85 aa		11.62	□□□□□ -0.55
DEP1	YAL013W	YGL114W	P53134	725 aa		11.61	□□□□□ -0.55
DEP1	YAL013W	ARR2	Q06597	130 aa		11.61	□□□□□ -0.55
DEP1	YAL013W	PRR2	Q12310	699 aa		11.61	□□□□□ -0.55
DEP1	YAL013W	Q0297	Q9ZZV8	51 aa		11.61	□□□□□ -0.55
DEP1	YAL013W	YHL044W	P38727	235 aa		11.6	□□□□□ -0.55
DEP1	YAL013W	EMC5	P40540	141 aa		11.6	□□□□□ -0.55
DEP1	YAL013W	RPL9B	P51401	191 aa	Known RBP	11.6	□□□□□ -0.55
DEP1	YAL013W	YCL001W-A	P87012	153 aa		11.6	□□□□□ -0.55
DEP1	YAL013W	RDL1	Q12305	139 aa	Known RBP	11.6	□□□□□ -0.55
DEP1	YAL013W	TCA17	P32613	152 aa		11.59	□□□□□ -0.55
DEP1	YAL013W	GZF3	P42944	551 aa	Known RBP	11.59	□□□□□ -0.55
DEP1	YAL013W	HCH1	P53834	153 aa		11.59	□□□□□ -0.55
DEP1	YAL013W	PDR17	P53844	350 aa		11.59	□□□□□ -0.55
DEP1	YAL013W	STD1	Q02794	444 aa		11.59	□□□□□ -0.55
DEP1	YAL013W	ISU1	Q03020	165 aa		11.59	□□□□□ -0.55
DEP1	YAL013W	MRPS17	Q03246	237 aa	Predicted RBP	11.59	□□□□□ -0.55
DEP1	YAL013W	MIX17	Q03667	156 aa		11.59	□□□□□ -0.55
DEP1	YAL013W	PSD1	P39006	500 aa		11.58	□□□□□ -0.56
DEP1	YAL013W	ERG25	P53045	309 aa		11.58	□□□□□ -0.56
DEP1	YAL013W	IRC25	Q07951	179 aa		11.58	□□□□□ -0.56
DEP1	YAL013W	ZRC1	P20107	442 aa		11.57	□□□□□ -0.56
DEP1	YAL013W	YPS3	Q12303	508 aa		11.57	□□□□□ -0.56
DEP1	YAL013W	AGC1	Q12482	902 aa		11.57	□□□□□ -0.56
DEP1	YAL013W	YGL258W-A	Q3E740	77 aa		11.57	□□□□□ -0.56
DEP1	YAL013W	HBN1	Q96VH4	193 aa		11.57	□□□□□ -0.56
DEP1	YAL013W	PMU1	P36069	295 aa		11.56	□□□□□ -0.56
DEP1	YAL013W	SPC25	P40014	221 aa		11.56	□□□□□ -0.56
DEP1	YAL013W	DFG10	P40526	253 aa		11.56	□□□□□ -0.56
DEP1	YAL013W	SNN1	P48232	102 aa		11.56	□□□□□ -0.56
DEP1	YAL013W	FMP41	P53889	259 aa	Known RBP	11.56	□□□□□ -0.56
DEP1	YAL013W	ADH6	Q04894	360 aa	Known RBP	11.56	□□□□□ -0.56

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