RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 RDXP35241 583 aaKnown RBP5.7□□□□□ -1.5
VPS35-205ENST00000563984 SOX5P35711 763 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 PAPOLAP51003 745 aaKnown RBP5.7□□□□□ -1.5
VPS35-205ENST00000563984 COPAP53621 1224 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 MANFP55145 182 aaKnown RBP5.7□□□□□ -1.5
VPS35-205ENST00000563984 NRG3P56975 720 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 UBASH3AP57075 661 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 TGFB2P61812 414 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 RBM6P78332 1123 aaKnown RBP5.7□□□□□ -1.5
VPS35-205ENST00000563984 NUCB2P80303 420 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 CCDC173Q0VFZ6 552 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 PDE1CQ14123 709 aaPredicted RBP5.7□□□□□ -1.5
VPS35-205ENST00000563984 KIF22Q14807 665 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 CNGA3Q16281 694 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 MIIPQ5JXC2 388 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 IGFL4Q6B9Z1 124 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 MFSD5Q6N075 450 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 IRGCQ6NXR0 463 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 KRT222Q8N1A0 295 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 GAB3Q8WWW8 586 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 MIEF2Q96C03 454 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 BICD1Q96G01 975 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 NAF1Q96HR8 494 aaKnown RBP5.7□□□□□ -1.5
VPS35-205ENST00000563984 DHTKD1Q96HY7 919 aaPredicted RBP5.7□□□□□ -1.5
VPS35-205ENST00000563984 UTP14AQ9BVJ6 771 aaKnown RBP5.7□□□□□ -1.5
VPS35-205ENST00000563984 LRRCC1Q9C099 1032 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 CSRNP2Q9H175 543 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 VPS33BQ9H267 617 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 HOMER2Q9NSB8 354 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 PDRG1Q9NUG6 133 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.7□□□□□ -1.5
VPS35-205ENST00000563984 USP18Q9UMW8 372 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 SNX5Q9Y5X3 404 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 SQORQ9Y6N5 450 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 AKNAQ7Z591 1439 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 GOLGA6L10A0A0M3HER8 536 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 KRTAP23-1A1A580 65 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 NEMP1O14524 444 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 NRP1O14786 923 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 SEC24DO94855 1032 aaPredicted RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 SMC2O95347 1197 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 HSPA4P34932 840 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 PPM1FP49593 454 aaPredicted RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 CSE1LP55060 971 aaKnown RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 TPD52P55327 224 aaPredicted RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 NPEPPSP55786 919 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 CD69Q07108 199 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 HLTFQ14527 1009 aaKnown RBP eCLIP5.69□□□□□ -1.5
VPS35-205ENST00000563984 PDIA5Q14554 519 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 SYCP1Q15431 976 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 FKBP15Q5T1M5 1219 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 KIAA1614Q5VZ46 1190 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 TTC19Q6DKK2 380 aaPredicted RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 KCNV1Q6PIU1 500 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 SEPT14Q6ZU15 432 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 DZIP1Q86YF9 867 aaKnown RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 RAVER1Q8IY67 606 aaKnown RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 PEX5LQ8IYB4 626 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 CPXCR1Q8N123 301 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 GSDMBQ8TAX9 411 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 CHAC2Q8WUX2 184 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 ANKRD49Q8WVL7 239 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 ZNF503Q96F45 646 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 SH3GL1Q99961 368 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 CRACR2AQ9BSW2 395 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 ANO3Q9BYT9 981 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 MS4A5Q9H3V2 200 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 ZNF703Q9H7S9 590 aaPredicted RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 ZNF304Q9HCX3 659 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.69□□□□□ -1.5
VPS35-205ENST00000563984 CHMP5Q9NZZ3 219 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 SPATA7Q9P0W8 599 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 TMPRSS11EQ9UL52 423 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 APOBEC2Q9Y235 224 aaKnown RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 TMEM98Q9Y2Y6 226 aa5.69□□□□□ -1.5
VPS35-205ENST00000563984 LUC7L2Q9Y383 392 aaKnown RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 MORC2Q9Y6X9 1032 aaPredicted RBP5.69□□□□□ -1.5
VPS35-205ENST00000563984 PRDM2Q13029 1718 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 SETD1BQ9UPS6 1966 aaKnown RBP5.68□□□□□ -1.5
VPS35-205ENST00000563984 LCHNA4D1U4 455 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 AKR1B10O60218 316 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 MFAP3LO75121 409 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 LY86O95711 162 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 ZNF24P17028 368 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 MASP1P48740 699 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 RIPK4P57078 832 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 DEUP1Q05D60 604 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 STRN3Q13033 797 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 SPIDRQ14159 915 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 POSTNQ15063 836 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 GSPT2Q8IYD1 628 aaKnown RBP5.68□□□□□ -1.5
VPS35-205ENST00000563984 DRAXINQ8NBI3 349 aaPredicted RBP5.68□□□□□ -1.5
VPS35-205ENST00000563984 PIK3C3Q8NEB9 887 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 OR14C36Q8NHC7 312 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 IL17DQ8TAD2 202 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 BRSK1Q8TDC3 778 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 NELL1Q92832 810 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 SH3KBP1Q96B97 665 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 ARL8AQ96BM9 186 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 PTPRHQ9HD43 1115 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms