RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 AEBP2Q6ZN18 517 aaPredicted RBP29.24■■■□□ 2.27
VPS35-205ENST00000563984 CHIC1Q5VXU3 224 aa27.22■■□□□ 1.95
VPS35-205ENST00000563984 SENP3Q9H4L4 574 aaPredicted RBP24.96■■□□□ 1.59
VPS35-205ENST00000563984 PHF23Q9BUL5 403 aaPredicted RBP24.59■■□□□ 1.53
VPS35-205ENST00000563984 FOXD1Q16676 465 aa23.4■■□□□ 1.34
VPS35-205ENST00000563984 POTEDQ86YR6 584 aa22.73■■□□□ 1.23
VPS35-205ENST00000563984 MSH5O43196 834 aa22.08■■□□□ 1.13
VPS35-205ENST00000563984 PIAS4Q8N2W9 510 aaPredicted RBP21.66■■□□□ 1.06
VPS35-205ENST00000563984 PPP6R1Q9UPN7 881 aa21.42■■□□□ 1.02
VPS35-205ENST00000563984 PLPPR3Q6T4P5 718 aa21.3■■□□□ 1
VPS35-205ENST00000563984 ADRA2BP18089 450 aa21.28■■□□□ 1
VPS35-205ENST00000563984 MAPK8IP2Q13387 824 aaPredicted RBP19.77■□□□□ 0.76
VPS35-205ENST00000563984 DMRT2Q9Y5R5 561 aa19.72■□□□□ 0.75
VPS35-205ENST00000563984 SCAF1Q9H7N4 1312 aaKnown RBP19.37■□□□□ 0.69
VPS35-205ENST00000563984 CACNB1Q02641 598 aaPredicted RBP19.36■□□□□ 0.69
VPS35-205ENST00000563984 DCAF8L1A6NGE4 600 aa18.89■□□□□ 0.61
VPS35-205ENST00000563984 RNF39Q9H2S5 420 aa18.82■□□□□ 0.6
VPS35-205ENST00000563984 HOXD11P31277 338 aaPredicted RBP18.75■□□□□ 0.59
VPS35-205ENST00000563984 PPP4R3CPQ6ZMV5 832 aa18.62■□□□□ 0.57
VPS35-205ENST00000563984 C1QBPQ07021 282 aaKnown RBP18.48■□□□□ 0.55
VPS35-205ENST00000563984 RNF216Q9NWF9 866 aaPredicted RBP18.41■□□□□ 0.54
VPS35-205ENST00000563984 CNKSR2Q8WXI2 1034 aa18.4■□□□□ 0.54
VPS35-205ENST00000563984 DNAJC5BQ9UF47 199 aa18.21■□□□□ 0.51
VPS35-205ENST00000563984 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.81■□□□□ 0.44
VPS35-205ENST00000563984 POTEHQ6S545 545 aa17.66■□□□□ 0.42
VPS35-205ENST00000563984 NCBP3Q53F19 620 aaKnown RBP17.64■□□□□ 0.41
VPS35-205ENST00000563984 NPM3O75607 178 aaKnown RBP17.46■□□□□ 0.39
VPS35-205ENST00000563984 DSG3P32926 999 aa17.42■□□□□ 0.38
VPS35-205ENST00000563984 U3KPZ7 1027 aaPredicted RBP17.42■□□□□ 0.38
VPS35-205ENST00000563984 SPINK5Q9NQ38 1064 aaPredicted RBP17.37■□□□□ 0.37
VPS35-205ENST00000563984 CAPN15O75808 1086 aa17.31■□□□□ 0.36
VPS35-205ENST00000563984 TRHP20396 242 aaPredicted RBP16.89■□□□□ 0.29
VPS35-205ENST00000563984 ABCB7O75027 752 aa16.88■□□□□ 0.29
VPS35-205ENST00000563984 SLC4A2P04920 1241 aa16.88■□□□□ 0.29
VPS35-205ENST00000563984 ZNF219Q9P2Y4 722 aaPredicted RBP16.8■□□□□ 0.28
VPS35-205ENST00000563984 APLP2Q06481 763 aa16.74■□□□□ 0.27
VPS35-205ENST00000563984 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.6■□□□□ 0.25
VPS35-205ENST00000563984 HNRNPUL2Q1KMD3 747 aaKnown RBP16.6■□□□□ 0.25
VPS35-205ENST00000563984 RBM42Q9BTD8 480 aaKnown RBP16.56■□□□□ 0.24
VPS35-205ENST00000563984 KCNA4P22459 653 aa16.55■□□□□ 0.24
VPS35-205ENST00000563984 CHRDL2Q6WN34 429 aa16.5■□□□□ 0.23
VPS35-205ENST00000563984 SAMD1Q6SPF0 538 aaPredicted RBP16.49■□□□□ 0.23
VPS35-205ENST00000563984 POLA2Q14181 598 aa16.3■□□□□ 0.2
VPS35-205ENST00000563984 SP7Q8TDD2 431 aaPredicted RBP16.24■□□□□ 0.19
VPS35-205ENST00000563984 MYCNP04198 464 aaPredicted RBP16.12■□□□□ 0.17
VPS35-205ENST00000563984 AKT1S1Q96B36 256 aa16.08■□□□□ 0.16
VPS35-205ENST00000563984 PIP4P2Q8N4L2 257 aa15.99■□□□□ 0.15
VPS35-205ENST00000563984 REM2Q8IYK8 340 aaPredicted RBP15.95■□□□□ 0.14
VPS35-205ENST00000563984 ATF5Q9Y2D1 282 aaPredicted RBP15.89■□□□□ 0.13
VPS35-205ENST00000563984 ZBTB12Q9Y330 459 aaPredicted RBP15.85■□□□□ 0.13
VPS35-205ENST00000563984 HAX1O00165 279 aa15.84■□□□□ 0.13
VPS35-205ENST00000563984 FXR2P51116 673 aaKnown RBP eCLIP15.8■□□□□ 0.128e-12■■■□□ 17.3
VPS35-205ENST00000563984 OSCARQ8IYS5 282 aa15.8■□□□□ 0.12
VPS35-205ENST00000563984 PITPNM1O00562 1244 aa15.79■□□□□ 0.12
VPS35-205ENST00000563984 EVX2Q03828 476 aa15.69■□□□□ 0.1
VPS35-205ENST00000563984 FOXD4L1Q9NU39 408 aa15.61■□□□□ 0.09
VPS35-205ENST00000563984 SLC4A1APQ9BWU0 796 aaKnown RBP15.52■□□□□ 0.08
VPS35-205ENST00000563984 PRKAR2AP13861 404 aaKnown RBP15.36■□□□□ 0.05
VPS35-205ENST00000563984 SPDYE2BA6NHP3 402 aa15.35■□□□□ 0.05
VPS35-205ENST00000563984 SPDYE6P0CI01 402 aa15.35■□□□□ 0.05
VPS35-205ENST00000563984 SPDYE2Q495Y8 402 aa15.35■□□□□ 0.05
VPS35-205ENST00000563984 C19orf67A6NJJ6 358 aa15.31■□□□□ 0.04
VPS35-205ENST00000563984 GABBR2O75899 941 aa15.25■□□□□ 0.03
VPS35-205ENST00000563984 CLEC11AQ9Y240 323 aa15.25■□□□□ 0.03
VPS35-205ENST00000563984 ZBTB22O15209 634 aa15.24■□□□□ 0.03
VPS35-205ENST00000563984 LHX8Q68G74 356 aa15.23■□□□□ 0.03
VPS35-205ENST00000563984 SPDYE1Q8NFV5 336 aaPredicted RBP15.23■□□□□ 0.03
VPS35-205ENST00000563984 FBLN2P98095 1184 aa15.19■□□□□ 0.02
VPS35-205ENST00000563984 ATXN8OSP0DMR3 200 aa15.18■□□□□ 0.02
VPS35-205ENST00000563984 MKRN4PQ13434 485 aaPredicted RBP15.11■□□□□ 0.01
VPS35-205ENST00000563984 SSUH2Q9Y2M2 353 aa15.11■□□□□ 0.01
VPS35-205ENST00000563984 CHADLQ6NUI6 762 aa15.08■□□□□ 0
VPS35-205ENST00000563984 ZNF692Q9BU19 519 aaPredicted RBP15.06■□□□□ 0
VPS35-205ENST00000563984 POTEIP0CG38 1075 aa14.97□□□□□ -0.01
VPS35-205ENST00000563984 PRR29P0C7W0 189 aa14.9□□□□□ -0.02
VPS35-205ENST00000563984 PABPN1Q86U42 306 aaKnown RBP eCLIP14.83□□□□□ -0.04
VPS35-205ENST00000563984 CD44P16070 742 aaKnown RBP14.82□□□□□ -0.04
VPS35-205ENST00000563984 PLSCR2Q9NRY7 297 aa14.76□□□□□ -0.05
VPS35-205ENST00000563984 FARP1Q9Y4F1 1045 aaPredicted RBP14.76□□□□□ -0.05
VPS35-205ENST00000563984 EHMT2Q96KQ7 1210 aa14.73□□□□□ -0.05
VPS35-205ENST00000563984 CLCN6P51797 869 aa14.71□□□□□ -0.05
VPS35-205ENST00000563984 CSRNP3Q8WYN3 585 aa14.69□□□□□ -0.06
VPS35-205ENST00000563984 DCBLD2Q96PD2 775 aa14.64□□□□□ -0.07
VPS35-205ENST00000563984 ZNF579Q8NAF0 562 aaKnown RBP14.58□□□□□ -0.08
VPS35-205ENST00000563984 OTUD5Q96G74 571 aa14.52□□□□□ -0.09
VPS35-205ENST00000563984 ZRANB1Q9UGI0 708 aa14.52□□□□□ -0.09
VPS35-205ENST00000563984 POTEB2H3BUK9 544 aa14.47□□□□□ -0.09
VPS35-205ENST00000563984 GALR2O43603 387 aaPredicted RBP14.47□□□□□ -0.09
VPS35-205ENST00000563984 CREBZFQ9NS37 354 aa14.43□□□□□ -0.1
VPS35-205ENST00000563984 POTEMA6NI47 508 aa14.37□□□□□ -0.11
VPS35-205ENST00000563984 POTEGQ6S5H5 508 aa14.3□□□□□ -0.12
VPS35-205ENST00000563984 PELP1Q8IZL8 1130 aaKnown RBP14.28□□□□□ -0.12
VPS35-205ENST00000563984 PHF12Q96QT6 1004 aa14.28□□□□□ -0.12
VPS35-205ENST00000563984 STAG3Q9UJ98 1225 aa14.25□□□□□ -0.13
VPS35-205ENST00000563984 PAK3O75914 559 aaPredicted RBP14.19□□□□□ -0.14
VPS35-205ENST00000563984 POTEJP0CG39 1038 aa14.15□□□□□ -0.14
VPS35-205ENST00000563984 PCDH10Q9P2E7 1040 aa14.14□□□□□ -0.15
VPS35-205ENST00000563984 MNX1P50219 401 aaPredicted RBP14.12□□□□□ -0.15
VPS35-205ENST00000563984 ASTLQ6HA08 431 aaPredicted RBP14.11□□□□□ -0.15
VPS35-205ENST00000563984 METRNQ9UJH8 293 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms