RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SPOPLQ6IQ16 392 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 XRRA1Q6P2D8 792 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ANKS1BQ7Z6G8 1248 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 FAM228AQ86W67 206 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SCYL3Q8IZE3 742 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ATL2Q8NHH9 583 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ATG4CQ96DT6 458 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SGSM3Q96HU1 749 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PICK1Q9NRD5 415 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 RNF146Q9NTX7 359 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PTPRJQ12913 1337 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 RLFQ13129 1914 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PHIPQ8WWQ0 1821 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 IRF6O14896 467 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SORBS3O60504 671 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 VNN1O95497 513 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 OAS1P00973 400 aaKnown RBP17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 RALAP11233 206 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 DSG3P32926 999 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 HMGCS2P54868 508 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 LRRC14Q15048 493 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ANKS4BQ8N8V4 417 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 MCPH1Q8NEM0 835 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 RNF217Q8TC41 542 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 GRK7Q8WTQ7 553 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ATP6V0A1Q93050 837 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TRIM11Q96F44 468 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 BICD1Q96G01 975 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 HEMGNQ9BXL5 484 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 HAPLN2Q9GZV7 340 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 GBA2Q9HCG7 927 aaPredicted RBP17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 NINJ2Q9NZG7 142 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SLC12A4Q9UP95 1085 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 HTTP42858 3142 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CHUKO15111 745 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 NSFP46459 744 aaKnown RBP17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 NLRP11P59045 1033 aaKnown RBP17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CCDC60Q8IWA6 550 aaPredicted RBP17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PARP9Q8IXQ6 854 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 POLR3FQ9H1D9 316 aaPredicted RBP17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 APOBEC3GQ9HC16 384 aaKnown RBP17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CYP26B1Q9NR63 512 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 HOMER3Q9NSC5 361 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SAMD15Q9P1V8 674 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ZNF112Q9UJU3 913 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ANAPC5Q9UJX4 755 aa17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CTDP1Q9Y5B0 961 aaPredicted RBP17.09■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TMEM120BA0PK00 339 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 MAFGO15525 162 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SNX3O60493 162 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TCEA3O75764 348 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 GAS8O95995 478 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ATF2P15336 505 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 GJA5P36382 358 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 IREB2P48200 963 aaKnown RBP17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 BPIFB4P59827 614 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CAV1Q03135 178 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 MPP2Q14168 576 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CRELD2Q6UXH1 353 aaPredicted RBP17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 REPS2Q8NFH8 660 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TRAIPQ9BWF2 469 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SEPT9Q9UHD8 586 aaPredicted RBP17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CSADQ9Y600 493 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 STYXL1Q9Y6J8 313 aa17.08■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TRPM7Q96QT4 1865 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ECM2O94769 699 aaPredicted RBP17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PSAPP07602 524 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GSTA1P08263 222 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CETPP11597 493 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ADCY8P40145 1251 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 HUNKP57058 714 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 NOMO3P69849 1222 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PRKCEQ02156 737 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CCNG2Q16589 344 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 WDR44Q5JSH3 913 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CYP4X1Q8N118 509 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 MGARPQ8TDB4 240 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 OPTNQ96CV9 577 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 FAM118BQ9BPY3 351 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 C11orf70Q9BRQ4 267 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ATP6V0A4Q9HBG4 840 aa17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TPX2Q9ULW0 747 aaKnown RBP17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 MYH9P35579 1960 aaKnown RBP17.08■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PSTPIP1O43586 416 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 FDX1P10109 184 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ACOT2P49753 483 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 VPS41P49754 854 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 MAMLD1Q13495 774 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ABHD15Q6UXT9 468 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TRPM8Q7Z2W7 1104 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 IFT74Q96LB3 600 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SCLT1Q96NL6 688 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 KIAA1586Q9HCI6 787 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SIP14410 1827 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PAPPA2Q9BXP8 1791 aa17.07■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 MGRN1O60291 552 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 DKC1O60832 514 aaKnown RBP eCLIP17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TNNI1P19237 187 aa17.06■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SSTR3P32745 418 aaPredicted RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms