RNA–Protein interactions for RNA: YOR216C

RUD3, Transcript of Golgi matrix protein, yeast

Gene RUD3, Length 1,455 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUD3	YOR216C	SPT5	P27692	1063 aa	Known RBP	6.6	□□□□□ -1.35
RUD3	YOR216C	AHP1	P38013	176 aa	Known RBP	6.6	□□□□□ -1.35
RUD3	YOR216C	GPM1	P00950	247 aa	Known RBP	6.6	□□□□□ -1.35
RUD3	YOR216C	UTP7	P40055	554 aa	Known RBP	6.6	□□□□□ -1.35
RUD3	YOR216C	YBL036C	P38197	257 aa		6.59	□□□□□ -1.36
RUD3	YOR216C	TBS1	P38114	1094 aa		6.58	□□□□□ -1.36
RUD3	YOR216C	LEU3	P08638	886 aa		6.57	□□□□□ -1.36
RUD3	YOR216C	SUM1	P46676	1062 aa		6.57	□□□□□ -1.36
RUD3	YOR216C	SBP1	P10080	294 aa	Known RBP	6.56	□□□□□ -1.36
RUD3	YOR216C	HPC2	Q01448	625 aa		6.56	□□□□□ -1.36
RUD3	YOR216C	YCK2	P23292	546 aa	Known RBP	6.55	□□□□□ -1.36
RUD3	YOR216C	JJJ2	P46997	583 aa		6.55	□□□□□ -1.36
RUD3	YOR216C	SOH1	P38633	127 aa		6.54	□□□□□ -1.36
RUD3	YOR216C	SLX8	P40072	274 aa		6.54	□□□□□ -1.36
RUD3	YOR216C	ALA1	P40825	983 aa	Known RBP	6.54	□□□□□ -1.36
RUD3	YOR216C	UTP13	Q05946	817 aa	Known RBP	6.54	□□□□□ -1.36
RUD3	YOR216C	IRE1	P32361	1115 aa		6.53	□□□□□ -1.36
RUD3	YOR216C	SHM1	P37292	490 aa	Predicted RBP	6.53	□□□□□ -1.36
RUD3	YOR216C	YNR014W	P53719	212 aa		6.53	□□□□□ -1.36
RUD3	YOR216C	FPS1	P23900	669 aa		6.53	□□□□□ -1.36
RUD3	YOR216C	RPN1	P38764	993 aa	Known RBP	6.53	□□□□□ -1.36
RUD3	YOR216C	HDA3	Q06623	655 aa		6.53	□□□□□ -1.36
RUD3	YOR216C	YDR215C	Q12240	137 aa		6.53	□□□□□ -1.36
RUD3	YOR216C	BOI2	P39969	1040 aa		6.51	□□□□□ -1.37
RUD3	YOR216C	TFB3	Q03290	321 aa		6.51	□□□□□ -1.37
RUD3	YOR216C	PKC1	P24583	1151 aa		6.5	□□□□□ -1.37
RUD3	YOR216C	KNS1	P32350	737 aa	Predicted RBP	6.5	□□□□□ -1.37
RUD3	YOR216C	BIO2	P32451	375 aa		6.5	□□□□□ -1.37
RUD3	YOR216C	BRL1	P38770	471 aa		6.5	□□□□□ -1.37
RUD3	YOR216C	MET1	P36150	593 aa		6.49	□□□□□ -1.37
RUD3	YOR216C	ATG3	P40344	310 aa		6.49	□□□□□ -1.37
RUD3	YOR216C	PSH1	Q12161	406 aa		6.49	□□□□□ -1.37
RUD3	YOR216C	PDC6	P26263	563 aa	Known RBP	6.48	□□□□□ -1.37
RUD3	YOR216C	MRPL16	P38064	232 aa		6.48	□□□□□ -1.37
RUD3	YOR216C	AMN1	P38285	549 aa	Predicted RBP	6.48	□□□□□ -1.37
RUD3	YOR216C	YPP1	P46951	817 aa		6.48	□□□□□ -1.37
RUD3	YOR216C	SUP45	P12385	437 aa	Known RBP	6.47	□□□□□ -1.37
RUD3	YOR216C	PDC5	P16467	563 aa	Known RBP	6.47	□□□□□ -1.37
RUD3	YOR216C	SLN1	P39928	1220 aa	Predicted RBP	6.47	□□□□□ -1.37
RUD3	YOR216C	SPR3	P41901	512 aa		6.47	□□□□□ -1.37
RUD3	YOR216C	ENO2	P00925	437 aa	Known RBP	6.46	□□□□□ -1.38
RUD3	YOR216C	RPS31	P05759	152 aa	Known RBP	6.46	□□□□□ -1.38
RUD3	YOR216C	YPQ2	Q06328	317 aa		6.46	□□□□□ -1.38
RUD3	YOR216C	YNL108C	P53929	270 aa		6.45	□□□□□ -1.38
RUD3	YOR216C	TY1A-DR2	Q03964	440 aa	Known RBP	6.45	□□□□□ -1.38
RUD3	YOR216C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	6.45	□□□□□ -1.38	not detected
RUD3	YOR216C	RQC2	Q12532	1038 aa	Known RBP	6.45	□□□□□ -1.38
RUD3	YOR216C	STB3	Q12427	513 aa		6.44	□□□□□ -1.38
RUD3	YOR216C	LEU1	P07264	779 aa	Known RBP	6.43	□□□□□ -1.38
RUD3	YOR216C	LSB6	P42951	607 aa		6.43	□□□□□ -1.38
RUD3	YOR216C	SWI5	P08153	709 aa		6.42	□□□□□ -1.38
RUD3	YOR216C	RDS2	P19541	446 aa	Known RBP	6.41	□□□□□ -1.38
RUD3	YOR216C	MCA1	Q08601	432 aa		6.41	□□□□□ -1.38
RUD3	YOR216C	RPP1A	P05318	106 aa	Predicted RBP	6.41	□□□□□ -1.38
RUD3	YOR216C	RIM21	P48565	533 aa		6.41	□□□□□ -1.38
RUD3	YOR216C	TAT1	P38085	619 aa		6.4	□□□□□ -1.39
RUD3	YOR216C	MSC7	P38694	644 aa		6.4	□□□□□ -1.39
RUD3	YOR216C	MCM1	P11746	286 aa		6.38	□□□□□ -1.39
RUD3	YOR216C	AIM9	P40053	627 aa	Known RBP	6.38	□□□□□ -1.39
RUD3	YOR216C	ALD2	P47771	506 aa		6.38	□□□□□ -1.39
RUD3	YOR216C	YNL165W	P53891	406 aa		6.37	□□□□□ -1.39
RUD3	YOR216C	RPS6A	P0CX37	236 aa	Known RBP	6.36	□□□□□ -1.39
RUD3	YOR216C	RPS6B	P0CX38	236 aa	Predicted RBP	6.36	□□□□□ -1.39
RUD3	YOR216C	YPL034W	Q03083	165 aa		6.35	□□□□□ -1.39
RUD3	YOR216C	RGP1	P16664	663 aa		6.34	□□□□□ -1.39
RUD3	YOR216C	NTH2	P35172	780 aa		6.34	□□□□□ -1.4
RUD3	YOR216C	TPS3	P38426	1054 aa	Known RBP	6.34	□□□□□ -1.4
RUD3	YOR216C	PRY1	P47032	299 aa		6.34	□□□□□ -1.4
RUD3	YOR216C	YFL034W	P43564	1073 aa		6.32	□□□□□ -1.4
RUD3	YOR216C	YJL007C	P47080	104 aa		6.32	□□□□□ -1.4
RUD3	YOR216C	MRX10	Q05648	414 aa		6.32	□□□□□ -1.4
RUD3	YOR216C	HEH2	Q03281	663 aa		6.31	□□□□□ -1.4
RUD3	YOR216C	GLT1	Q12680	2145 aa	Known RBP	6.31	□□□□□ -1.4
RUD3	YOR216C	MLF3	P32047	452 aa		6.3	□□□□□ -1.4
RUD3	YOR216C	MAC1	P35192	417 aa		6.3	□□□□□ -1.4
RUD3	YOR216C	YTA6	P40328	754 aa		6.3	□□□□□ -1.4
RUD3	YOR216C	PDI1	P17967	522 aa	Known RBP	6.29	□□□□□ -1.4
RUD3	YOR216C	BUD9	P53226	547 aa		6.29	□□□□□ -1.4
RUD3	YOR216C	NHA1	Q99271	985 aa		6.29	□□□□□ -1.4
RUD3	YOR216C	Q0182	Q9ZZW1	134 aa		6.29	□□□□□ -1.4
RUD3	YOR216C	ENO1	P00924	437 aa	Known RBP	6.28	□□□□□ -1.4
RUD3	YOR216C	INP52	P50942	1183 aa		6.28	□□□□□ -1.4
RUD3	YOR216C	TSC13	Q99190	310 aa		6.27	□□□□□ -1.41
RUD3	YOR216C	PGM1	P33401	570 aa	Known RBP	6.26	□□□□□ -1.41
RUD3	YOR216C	PGM2	P37012	569 aa	Known RBP	6.26	□□□□□ -1.41
RUD3	YOR216C	SKP1	P52286	194 aa		6.26	□□□□□ -1.41
RUD3	YOR216C	BIM1	P40013	344 aa		6.25	□□□□□ -1.41
RUD3	YOR216C	PRK1	P40494	810 aa		6.25	□□□□□ -1.41
RUD3	YOR216C	AI3	P03877	415 aa		6.24	□□□□□ -1.41
RUD3	YOR216C	CYT1	P07143	309 aa		6.24	□□□□□ -1.41
RUD3	YOR216C	ALG14	P38242	237 aa		6.24	□□□□□ -1.41
RUD3	YOR216C	ATG32	P40458	529 aa		6.24	□□□□□ -1.41
RUD3	YOR216C	ALO1	P54783	526 aa	Known RBP	6.24	□□□□□ -1.41
RUD3	YOR216C	UTP4	Q06679	776 aa	Known RBP	6.24	□□□□□ -1.41
RUD3	YOR216C	TIF1	P10081	395 aa	Known RBP	6.23	□□□□□ -1.41
RUD3	YOR216C	PEP12	P32854	288 aa		6.23	□□□□□ -1.41
RUD3	YOR216C	IRC24	P40580	263 aa		6.23	□□□□□ -1.41
RUD3	YOR216C	MTO1	P53070	669 aa		6.22	□□□□□ -1.41
RUD3	YOR216C	GIS4	Q04233	774 aa		6.22	□□□□□ -1.41
RUD3	YOR216C	NAR1	P23503	491 aa	Known RBP	6.22	□□□□□ -1.41

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms