RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C NUD1P32336 851 aa3.4□□□□□ -1.87
DNL4YOR005C SUV3P32580 737 aa3.4□□□□□ -1.87
DNL4YOR005C NUG1P40010 520 aaKnown RBP3.4□□□□□ -1.87
DNL4YOR005C ALD6P54115 500 aaKnown RBP3.4□□□□□ -1.87
DNL4YOR005C YPR097WQ06839 1073 aa3.4□□□□□ -1.87
DNL4YOR005C GPI13Q07830 1017 aa3.4□□□□□ -1.87
DNL4YOR005C MPC54Q08550 464 aa3.4□□□□□ -1.87
DNL4YOR005C PIN2Q12057 282 aa3.4□□□□□ -1.87
DNL4YOR005C BPT1P14772 1559 aa3.39□□□□□ -1.87
DNL4YOR005C PHO4P07270 312 aaKnown RBP3.39□□□□□ -1.87
DNL4YOR005C PDI1P17967 522 aaKnown RBP3.39□□□□□ -1.87
DNL4YOR005C RTS3P53289 263 aa3.39□□□□□ -1.87
DNL4YOR005C RMD1Q03441 430 aa3.39□□□□□ -1.87
DNL4YOR005C PDR15Q04182 1529 aaKnown RBP3.39□□□□□ -1.87
DNL4YOR005C MIP1P15801 1254 aa3.39□□□□□ -1.87
DNL4YOR005C MCM2P29469 868 aa3.39□□□□□ -1.87
DNL4YOR005C SRP40P32583 406 aaPredicted RBP3.39□□□□□ -1.87
DNL4YOR005C RRP14P36080 434 aaKnown RBP3.39□□□□□ -1.87
DNL4YOR005C BOI1P38041 980 aaKnown RBP3.39□□□□□ -1.87
DNL4YOR005C FPR3P38911 411 aaKnown RBP3.39□□□□□ -1.87
DNL4YOR005C ALG12P53730 551 aa3.39□□□□□ -1.87
DNL4YOR005C PML39Q03760 334 aa3.39□□□□□ -1.87
DNL4YOR005C TRS120Q04183 1289 aa3.39□□□□□ -1.87
DNL4YOR005C TRS33Q99394 268 aa3.39□□□□□ -1.87
DNL4YOR005C SIN3P22579 1536 aa3.39□□□□□ -1.87
DNL4YOR005C PPG1P32838 368 aa3.38□□□□□ -1.87
DNL4YOR005C MID1P41821 548 aa3.38□□□□□ -1.87
DNL4YOR005C SPR3P41901 512 aa3.38□□□□□ -1.87
DNL4YOR005C OSW7P43611 510 aa3.38□□□□□ -1.87
DNL4YOR005C YJL049WP47048 450 aa3.38□□□□□ -1.87
DNL4YOR005C YJR008WP47085 338 aa3.38□□□□□ -1.87
DNL4YOR005C RPN4Q03465 531 aa3.38□□□□□ -1.87
DNL4YOR005C NSE3Q05541 303 aa3.38□□□□□ -1.87
DNL4YOR005C UBX5Q06682 500 aa3.38□□□□□ -1.87
DNL4YOR005C UBP1P25037 809 aa3.38□□□□□ -1.87
DNL4YOR005C YKL091CP33324 310 aaKnown RBP3.38□□□□□ -1.87
DNL4YOR005C BUD6P41697 788 aa3.38□□□□□ -1.87
DNL4YOR005C SPR28Q04921 423 aa3.38□□□□□ -1.87
DNL4YOR005C SSF2Q12153 453 aaPredicted RBP3.38□□□□□ -1.87
DNL4YOR005C MMS22Q06164 1454 aa3.37□□□□□ -1.87
DNL4YOR005C HAL5P38970 855 aaKnown RBP3.37□□□□□ -1.87
DNL4YOR005C MAD1P40957 749 aa3.37□□□□□ -1.87
DNL4YOR005C YFL034WP43564 1073 aa3.37□□□□□ -1.87
DNL4YOR005C CBC2Q08920 208 aaKnown RBP RIP-Chip data3.37□□□□□ -1.87not detected
DNL4YOR005C RPO31P04051 1460 aa3.37□□□□□ -1.87
DNL4YOR005C SPT2P06843 333 aaPredicted RBP3.37□□□□□ -1.87
DNL4YOR005C RPT1P33299 467 aaKnown RBP3.37□□□□□ -1.87
DNL4YOR005C TOM20P35180 183 aa3.37□□□□□ -1.87
DNL4YOR005C NMA111P53920 997 aa3.37□□□□□ -1.87
DNL4YOR005C ALR1Q08269 859 aa3.37□□□□□ -1.87
DNL4YOR005C GEA2P39993 1459 aaKnown RBP3.37□□□□□ -1.87
DNL4YOR005C XRN1P22147 1528 aaKnown RBP3.37□□□□□ -1.87
DNL4YOR005C SPT6P23615 1451 aaKnown RBP3.36□□□□□ -1.87
DNL4YOR005C STI1P15705 589 aaKnown RBP RIP-Chip data3.36□□□□□ -1.87not detected
DNL4YOR005C CLN2P20438 545 aa3.36□□□□□ -1.87
DNL4YOR005C RAM1P22007 431 aa3.36□□□□□ -1.87
DNL4YOR005C NOP2P40991 618 aaKnown RBP3.36□□□□□ -1.87
DNL4YOR005C DAK2P43550 591 aa3.36□□□□□ -1.87
DNL4YOR005C STR2P47164 639 aa3.36□□□□□ -1.87
DNL4YOR005C ISM1P48526 1002 aa3.36□□□□□ -1.87
DNL4YOR005C APC11Q12157 165 aa3.36□□□□□ -1.87
DNL4YOR005C HSL1P34244 1518 aa3.36□□□□□ -1.87
DNL4YOR005C YCF1P39109 1515 aaKnown RBP3.36□□□□□ -1.87
DNL4YOR005C TY1A-DR4O74302 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-HP0C2I4 478 aaKnown RBP3.36□□□□□ -1.87
DNL4YOR005C TY1A-AP0CX57 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-PR1P0CX58 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-ORP0CX59 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-PR2P0CX60 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-DR5P0CX65 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-ER2P0CX66 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-GR3P0CX67 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-LR1P0CX68 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-MR2P0CX69 440 aa3.36□□□□□ -1.87
DNL4YOR005C SWE1P32944 819 aa3.36□□□□□ -1.87
DNL4YOR005C NPL4P33755 580 aa3.36□□□□□ -1.87
DNL4YOR005C VRP1P37370 817 aa3.36□□□□□ -1.87
DNL4YOR005C AIM9P40053 627 aaKnown RBP3.36□□□□□ -1.87
DNL4YOR005C RTT106P40161 455 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-JR2P47099 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-DR1Q03856 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-ML1Q04706 440 aaKnown RBP3.36□□□□□ -1.87
DNL4YOR005C TY1A-BRQ12217 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-NL2Q12470 440 aa3.36□□□□□ -1.87
DNL4YOR005C TY1A-GR2Q12485 440 aa3.36□□□□□ -1.87
DNL4YOR005C PDC1P06169 563 aaKnown RBP3.35□□□□□ -1.87
DNL4YOR005C NGR1P32831 672 aaKnown RBP3.35□□□□□ -1.87
DNL4YOR005C IXR1P33417 597 aa3.35□□□□□ -1.87
DNL4YOR005C NTH2P35172 780 aa3.35□□□□□ -1.87
DNL4YOR005C PDR1P12383 1068 aa3.35□□□□□ -1.87
DNL4YOR005C SEC2P17065 759 aa3.35□□□□□ -1.87
DNL4YOR005C YBR197CP38306 217 aa3.35□□□□□ -1.87
DNL4YOR005C UBP3Q01477 912 aaKnown RBP RIP-Chip data3.35□□□□□ -1.87not detected
DNL4YOR005C WRS1Q12109 432 aaKnown RBP3.35□□□□□ -1.87
DNL4YOR005C TSR4P25040 408 aa3.34□□□□□ -1.87
DNL4YOR005C VAC17P25591 423 aa3.34□□□□□ -1.87
DNL4YOR005C VPS35P34110 944 aa3.34□□□□□ -1.87
DNL4YOR005C PBP2P38151 413 aaKnown RBP RIP-Chip data3.34□□□□□ -1.87not detected
DNL4YOR005C CWH41P53008 833 aa3.34□□□□□ -1.87
DNL4YOR005C HDA3Q06623 655 aa3.34□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms