RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE2	YKL130C	SOH1	P38633	127 aa		4.9	□□□□□ -1.63
SHE2	YKL130C	ADE12	P80210	433 aa	Known RBP	4.9	□□□□□ -1.63
SHE2	YKL130C	PKC1	P24583	1151 aa		4.89	□□□□□ -1.63
SHE2	YKL130C	ATG3	P40344	310 aa		4.89	□□□□□ -1.63
SHE2	YKL130C	YPP1	P46951	817 aa		4.89	□□□□□ -1.63
SHE2	YKL130C	SYT1	Q06836	1226 aa		4.89	□□□□□ -1.63
SHE2	YKL130C	TY1A-DR3	Q12441	440 aa		4.89	□□□□□ -1.63
SHE2	YKL130C	SUM1	P46676	1062 aa		4.88	□□□□□ -1.63
SHE2	YKL130C	BIO2	P32451	375 aa		4.87	□□□□□ -1.63
SHE2	YKL130C	YNL108C	P53929	270 aa		4.87	□□□□□ -1.63
SHE2	YKL130C	UTP13	Q05946	817 aa	Known RBP	4.87	□□□□□ -1.63
SHE2	YKL130C	HDA3	Q06623	655 aa		4.87	□□□□□ -1.63
SHE2	YKL130C	CCT8	P47079	568 aa	Known RBP	4.86	□□□□□ -1.63
SHE2	YKL130C	YDR461C-A	Q2V2P7	80 aa		4.86	□□□□□ -1.63
SHE2	YKL130C	SLX8	P40072	274 aa		4.85	□□□□□ -1.63
SHE2	YKL130C	JJJ2	P46997	583 aa		4.85	□□□□□ -1.63
SHE2	YKL130C	ENO2	P00925	437 aa	Known RBP	4.84	□□□□□ -1.63
SHE2	YKL130C	IRE1	P32361	1115 aa		4.84	□□□□□ -1.63
SHE2	YKL130C	SBE2	P42223	864 aa	Known RBP	4.84	□□□□□ -1.63
SHE2	YKL130C	YPR053C	Q6Q5F3	151 aa		4.84	□□□□□ -1.63
SHE2	YKL130C	SUP45	P12385	437 aa	Known RBP	4.83	□□□□□ -1.64
SHE2	YKL130C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
SHE2	YKL130C	FPS1	P23900	669 aa		4.82	□□□□□ -1.64
SHE2	YKL130C	SHM1	P37292	490 aa	Predicted RBP	4.82	□□□□□ -1.64
SHE2	YKL130C	YNR014W	P53719	212 aa		4.82	□□□□□ -1.64
SHE2	YKL130C	TDA6	Q06466	467 aa		4.82	□□□□□ -1.64
SHE2	YKL130C	YJL007C	P47080	104 aa		4.81	□□□□□ -1.64
SHE2	YKL130C	GLT1	Q12680	2145 aa	Known RBP	4.81	□□□□□ -1.64
SHE2	YKL130C	MRPL16	P38064	232 aa		4.8	□□□□□ -1.64
SHE2	YKL130C	SKN7	P38889	622 aa		4.8	□□□□□ -1.64
SHE2	YKL130C	YMR187C	Q03236	431 aa		4.8	□□□□□ -1.64
SHE2	YKL130C	PSH1	Q12161	406 aa		4.8	□□□□□ -1.64
SHE2	YKL130C	STB3	Q12427	513 aa		4.8	□□□□□ -1.64
SHE2	YKL130C	SWI5	P08153	709 aa		4.79	□□□□□ -1.64
SHE2	YKL130C	PDC6	P26263	563 aa	Known RBP	4.79	□□□□□ -1.64
SHE2	YKL130C	AIM9	P40053	627 aa	Known RBP	4.79	□□□□□ -1.64
SHE2	YKL130C	RIM21	P48565	533 aa		4.79	□□□□□ -1.64
SHE2	YKL130C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
SHE2	YKL130C	GPM1	P00950	247 aa	Known RBP	4.78	□□□□□ -1.64
SHE2	YKL130C	SBP1	P10080	294 aa	Known RBP	4.78	□□□□□ -1.64
SHE2	YKL130C	BOI2	P39969	1040 aa		4.77	□□□□□ -1.65
SHE2	YKL130C	YFL034W	P43564	1073 aa		4.77	□□□□□ -1.65
SHE2	YKL130C	YPQ2	Q06328	317 aa		4.77	□□□□□ -1.65
SHE2	YKL130C	RPS6A	P0CX37	236 aa	Known RBP	4.76	□□□□□ -1.65
SHE2	YKL130C	RPS6B	P0CX38	236 aa	Predicted RBP	4.76	□□□□□ -1.65
SHE2	YKL130C	RDS2	P19541	446 aa	Known RBP	4.76	□□□□□ -1.65
SHE2	YKL130C	RPS31	P05759	152 aa	Known RBP	4.75	□□□□□ -1.65
SHE2	YKL130C	MCX1	P38323	520 aa	Predicted RBP	4.75	□□□□□ -1.65
SHE2	YKL130C	SPR3	P41901	512 aa		4.75	□□□□□ -1.65
SHE2	YKL130C	NTH2	P35172	780 aa		4.74	□□□□□ -1.65
SHE2	YKL130C	MET1	P36150	593 aa		4.74	□□□□□ -1.65
SHE2	YKL130C	YTA6	P40328	754 aa		4.74	□□□□□ -1.65
SHE2	YKL130C	PDC5	P16467	563 aa	Known RBP	4.73	□□□□□ -1.65
SHE2	YKL130C	PDI1	P17967	522 aa	Known RBP	4.73	□□□□□ -1.65
SHE2	YKL130C	RPL34B	P40525	121 aa	Known RBP	4.73	□□□□□ -1.65
SHE2	YKL130C	ENO1	P00924	437 aa	Known RBP	4.72	□□□□□ -1.65
SHE2	YKL130C	RPP1A	P05318	106 aa	Predicted RBP	4.72	□□□□□ -1.65
SHE2	YKL130C	LEU1	P07264	779 aa	Known RBP	4.72	□□□□□ -1.65
SHE2	YKL130C	YCK2	P23292	546 aa	Known RBP	4.72	□□□□□ -1.65
SHE2	YKL130C	KNS1	P32350	737 aa	Predicted RBP	4.72	□□□□□ -1.65
SHE2	YKL130C	RTG2	P32608	588 aa	Known RBP	4.72	□□□□□ -1.65
SHE2	YKL130C	BIM1	P40013	344 aa		4.72	□□□□□ -1.65
SHE2	YKL130C	YNL165W	P53891	406 aa		4.72	□□□□□ -1.65
SHE2	YKL130C	TY1A-DR2	Q03964	440 aa	Known RBP	4.72	□□□□□ -1.65
SHE2	YKL130C	TIF1	P10081	395 aa	Known RBP	4.71	□□□□□ -1.66
SHE2	YKL130C	MCM1	P11746	286 aa		4.71	□□□□□ -1.66
SHE2	YKL130C	ATG32	P40458	529 aa		4.71	□□□□□ -1.66
SHE2	YKL130C	HGH1	P48362	394 aa	Known RBP	4.71	□□□□□ -1.66
SHE2	YKL130C	MRX10	Q05648	414 aa		4.71	□□□□□ -1.66
SHE2	YKL130C	RGP1	P16664	663 aa		4.7	□□□□□ -1.66
SHE2	YKL130C	MLF3	P32047	452 aa		4.7	□□□□□ -1.66
SHE2	YKL130C	SLN1	P39928	1220 aa	Predicted RBP	4.7	□□□□□ -1.66
SHE2	YKL130C	ALD2	P47771	506 aa		4.7	□□□□□ -1.66
SHE2	YKL130C	YDR215C	Q12240	137 aa		4.7	□□□□□ -1.66
SHE2	YKL130C	TSC13	Q99190	310 aa		4.7	□□□□□ -1.66
SHE2	YKL130C	Q0182	Q9ZZW1	134 aa		4.7	□□□□□ -1.66
SHE2	YKL130C	CYT1	P07143	309 aa		4.69	□□□□□ -1.66
SHE2	YKL130C	TAT1	P38085	619 aa		4.68	□□□□□ -1.66
SHE2	YKL130C	MCA1	Q08601	432 aa		4.68	□□□□□ -1.66
SHE2	YKL130C	MSC7	P38694	644 aa		4.67	□□□□□ -1.66
SHE2	YKL130C	KTR7	P40504	517 aa		4.67	□□□□□ -1.66
SHE2	YKL130C	AMN1	P38285	549 aa	Predicted RBP	4.66	□□□□□ -1.66
SHE2	YKL130C	LSB6	P42951	607 aa		4.66	□□□□□ -1.66
SHE2	YKL130C	MTO1	P53070	669 aa		4.66	□□□□□ -1.66
SHE2	YKL130C	PRY1	P47032	299 aa		4.65	□□□□□ -1.67
SHE2	YKL130C	PEP12	P32854	288 aa		4.64	□□□□□ -1.67
SHE2	YKL130C	PHO87	P25360	923 aa		4.63	□□□□□ -1.67
SHE2	YKL130C	ALG14	P38242	237 aa		4.63	□□□□□ -1.67
SHE2	YKL130C	ACS2	P52910	683 aa	Known RBP	4.63	□□□□□ -1.67
SHE2	YKL130C	HEH2	Q03281	663 aa		4.63	□□□□□ -1.67
SHE2	YKL130C	NHA1	Q99271	985 aa		4.63	□□□□□ -1.67
SHE2	YKL130C	HAP4	P14064	554 aa		4.62	□□□□□ -1.67
SHE2	YKL130C	PGM2	P37012	569 aa	Known RBP	4.62	□□□□□ -1.67
SHE2	YKL130C	NCL1	P38205	684 aa	Known RBP	4.62	□□□□□ -1.67
SHE2	YKL130C	TPS3	P38426	1054 aa	Known RBP	4.61	□□□□□ -1.67
SHE2	YKL130C	PRK1	P40494	810 aa		4.61	□□□□□ -1.67
SHE2	YKL130C	GAS4	Q08271	471 aa		4.61	□□□□□ -1.67
SHE2	YKL130C	SCD5	P34758	872 aa		4.6	□□□□□ -1.67
SHE2	YKL130C	CUS1	Q02554	436 aa	Predicted RBP	4.6	□□□□□ -1.67
SHE2	YKL130C	UTP4	Q06679	776 aa	Known RBP	4.6	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 7.5 ms