RNA–Protein interactions for RNA: YHR170W

NMD3, Transcript of Protein involved in nuclear export of the large ribosomal subunit, yeast

Gene NMD3, Length 1,557 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD3	YHR170W	RRN7	P40992	514 aa		6.32	□□□□□ -1.4
NMD3	YHR170W	PDR5	P33302	1511 aa	Known RBP	6.31	□□□□□ -1.4
NMD3	YHR170W	CSE4	P36012	229 aa		6.31	□□□□□ -1.4
NMD3	YHR170W	YDL206W	Q12424	762 aa		6.31	□□□□□ -1.4
NMD3	YHR170W	MAK16	P10962	306 aa	Predicted RBP	6.3	□□□□□ -1.4
NMD3	YHR170W	SDH2	P21801	266 aa		6.3	□□□□□ -1.4
NMD3	YHR170W	GYP1	Q08484	637 aa		6.3	□□□□□ -1.4
NMD3	YHR170W	PDR11	P40550	1411 aa		6.29	□□□□□ -1.4
NMD3	YHR170W	IML1	P47170	1584 aa		6.28	□□□□□ -1.4
NMD3	YHR170W	YDJ1	P25491	409 aa	Known RBP	6.28	□□□□□ -1.4
NMD3	YHR170W	RPA14	P50106	137 aa		6.28	□□□□□ -1.4
NMD3	YHR170W	YNL108C	P53929	270 aa		6.28	□□□□□ -1.4
NMD3	YHR170W	TBF1	Q02457	562 aa		6.28	□□□□□ -1.4
NMD3	YHR170W	SAS4	Q04003	481 aa		6.28	□□□□□ -1.4
NMD3	YHR170W	ERG12	P07277	443 aa		6.27	□□□□□ -1.41
NMD3	YHR170W	TIF1	P10081	395 aa	Known RBP	6.27	□□□□□ -1.41
NMD3	YHR170W	SUP45	P12385	437 aa	Known RBP	6.27	□□□□□ -1.41
NMD3	YHR170W	YPR097W	Q06839	1073 aa		6.27	□□□□□ -1.41
NMD3	YHR170W	PDC1	P06169	563 aa	Known RBP	6.27	□□□□□ -1.41
NMD3	YHR170W	MOD5	P07884	428 aa		6.26	□□□□□ -1.41
NMD3	YHR170W	SPT16	P32558	1035 aa	Known RBP	6.26	□□□□□ -1.41
NMD3	YHR170W	BCK2	P33306	851 aa		6.26	□□□□□ -1.41
NMD3	YHR170W	TYS1	P36421	394 aa	Known RBP	6.25	□□□□□ -1.41
NMD3	YHR170W	DNF3	Q12674	1656 aa		6.24	□□□□□ -1.41
NMD3	YHR170W	PAT1	P25644	796 aa	Known RBP	6.24	□□□□□ -1.41
NMD3	YHR170W	NOP7	P53261	605 aa	Known RBP	6.24	□□□□□ -1.41
NMD3	YHR170W	ENO2	P00925	437 aa	Known RBP	6.23	□□□□□ -1.41
NMD3	YHR170W	HXT10	P43581	546 aa		6.23	□□□□□ -1.41
NMD3	YHR170W	ALR1	Q08269	859 aa		6.23	□□□□□ -1.41
NMD3	YHR170W	PAF1	P38351	445 aa		6.23	□□□□□ -1.41
NMD3	YHR170W	NUP192	P47054	1683 aa		6.22	□□□□□ -1.41
NMD3	YHR170W	SPT5	P27692	1063 aa	Known RBP	6.22	□□□□□ -1.41
NMD3	YHR170W	KXD1	P53158	218 aa		6.22	□□□□□ -1.41
NMD3	YHR170W	TPD3	P31383	635 aa		6.21	□□□□□ -1.42
NMD3	YHR170W	RTG2	P32608	588 aa	Known RBP	6.21	□□□□□ -1.42
NMD3	YHR170W	YAP3	P38749	330 aa		6.21	□□□□□ -1.42
NMD3	YHR170W	IPL1	P38991	367 aa		6.21	□□□□□ -1.42
NMD3	YHR170W	XDJ1	P39102	459 aa		6.21	□□□□□ -1.42
NMD3	YHR170W	FIG4	P42837	879 aa		6.21	□□□□□ -1.42
NMD3	YHR170W	NAF1	P53919	492 aa	Known RBP	6.21	□□□□□ -1.42
NMD3	YHR170W	RPL34B	P40525	121 aa	Known RBP	6.2	□□□□□ -1.42
NMD3	YHR170W	RAV1	P47104	1357 aa		6.2	□□□□□ -1.42
NMD3	YHR170W	RRD1	P40454	393 aa	Known RBP	6.19	□□□□□ -1.42
NMD3	YHR170W	MRX10	Q05648	414 aa		6.19	□□□□□ -1.42
NMD3	YHR170W	YPR084W	Q06821	456 aa		6.19	□□□□□ -1.42
NMD3	YHR170W	YPR204W	Q08995	1032 aa		6.19	□□□□□ -1.42
NMD3	YHR170W	MRF1	P30775	413 aa	Predicted RBP	6.18	□□□□□ -1.42
NMD3	YHR170W	CST6	P40535	587 aa		6.18	□□□□□ -1.42
NMD3	YHR170W	RIM21	P48565	533 aa		6.18	□□□□□ -1.42
NMD3	YHR170W	URN1	Q06525	465 aa	Known RBP	6.18	□□□□□ -1.42
NMD3	YHR170W	ENO1	P00924	437 aa	Known RBP	6.18	□□□□□ -1.42
NMD3	YHR170W	ISF1	P32488	338 aa		6.18	□□□□□ -1.42
NMD3	YHR170W	ORC1	P54784	914 aa	Predicted RBP	6.18	□□□□□ -1.42
NMD3	YHR170W	MCM16	Q12262	181 aa		6.18	□□□□□ -1.42
NMD3	YHR170W	AIM44	Q99299	758 aa		6.18	□□□□□ -1.42
NMD3	YHR170W	RTC1	Q08281	1341 aa		6.17	□□□□□ -1.42
NMD3	YHR170W	BDP1	P46678	594 aa		6.17	□□□□□ -1.42
NMD3	YHR170W	VAC17	P25591	423 aa		6.16	□□□□□ -1.42
NMD3	YHR170W	TAF5	P38129	798 aa		6.16	□□□□□ -1.42
NMD3	YHR170W	USO1	P25386	1790 aa		6.16	□□□□□ -1.42
NMD3	YHR170W	TEC1	P18412	486 aa		6.15	□□□□□ -1.42
NMD3	YHR170W	RDS2	P19541	446 aa	Known RBP	6.15	□□□□□ -1.42
NMD3	YHR170W	TTI1	P36097	1038 aa		6.15	□□□□□ -1.42
NMD3	YHR170W	EMP47	P43555	445 aa		6.15	□□□□□ -1.42
NMD3	YHR170W	PUS5	Q06244	254 aa		6.15	□□□□□ -1.42
NMD3	YHR170W	POL5	P39985	1022 aa	Known RBP	6.14	□□□□□ -1.43
NMD3	YHR170W	FRK1	Q03002	865 aa	Predicted RBP	6.14	□□□□□ -1.43
NMD3	YHR170W	FRA1	Q07825	749 aa		6.14	□□□□□ -1.43
NMD3	YHR170W	CPS1	P27614	576 aa		6.13	□□□□□ -1.43
NMD3	YHR170W	RAD9	P14737	1309 aa		6.12	□□□□□ -1.43
NMD3	YHR170W	RAS1	P01119	309 aa		6.12	□□□□□ -1.43
NMD3	YHR170W	GUT2	P32191	649 aa		6.12	□□□□□ -1.43
NMD3	YHR170W	PEP12	P32854	288 aa		6.11	□□□□□ -1.43
NMD3	YHR170W	YPP1	P46951	817 aa		6.11	□□□□□ -1.43
NMD3	YHR170W	STE20	Q03497	939 aa	Known RBP	6.11	□□□□□ -1.43
NMD3	YHR170W	SUB2	Q07478	446 aa	Known RBP	6.11	□□□□□ -1.43
NMD3	YHR170W	AMS1	P22855	1083 aa		6.1	□□□□□ -1.43
NMD3	YHR170W	APL6	P46682	809 aa		6.1	□□□□□ -1.43
NMD3	YHR170W	MAK10	Q02197	733 aa		6.1	□□□□□ -1.43
NMD3	YHR170W	TY3B-I	Q7LHG5	1498 aa	Known RBP	6.1	□□□□□ -1.43
NMD3	YHR170W	YEL077C	Q3E7X8	1277 aa		6.1	□□□□□ -1.43
NMD3	YHR170W	BCK1	Q01389	1478 aa		6.09	□□□□□ -1.43
NMD3	YHR170W	HAP1	P0CE41	1502 aa		6.09	□□□□□ -1.43
NMD3	YHR170W	KRE5	P22023	1365 aa		6.09	□□□□□ -1.43
NMD3	YHR170W	ESL2	P36168	1195 aa		6.09	□□□□□ -1.43
NMD3	YHR170W	CLA4	P48562	842 aa		6.09	□□□□□ -1.43
NMD3	YHR170W	CAB1	Q04430	367 aa		6.09	□□□□□ -1.43
NMD3	YHR170W	IXR1	P33417	597 aa		6.08	□□□□□ -1.44
NMD3	YHR170W	KIP3	P53086	805 aa	Known RBP	6.08	□□□□□ -1.44
NMD3	YHR170W	NAP1	P25293	417 aa	Known RBP	6.07	□□□□□ -1.44
NMD3	YHR170W	KIP2	P28743	706 aa		6.07	□□□□□ -1.44
NMD3	YHR170W	ALD4	P46367	519 aa	Known RBP	6.07	□□□□□ -1.44
NMD3	YHR170W	SSA4	P22202	642 aa	Known RBP	6.06	□□□□□ -1.44
NMD3	YHR170W	MRX12	P47084	519 aa		6.06	□□□□□ -1.44
NMD3	YHR170W	SYH1	Q02875	849 aa	Known RBP	6.06	□□□□□ -1.44
NMD3	YHR170W	TAF8	Q03750	510 aa		6.06	□□□□□ -1.44
NMD3	YHR170W	NOB1	Q08444	459 aa	Known RBP	6.06	□□□□□ -1.44
NMD3	YHR170W	YLR419W	Q06698	1435 aa	Known RBP	6.06	□□□□□ -1.44
NMD3	YHR170W	PUP1	P25043	261 aa		6.06	□□□□□ -1.44
NMD3	YHR170W	RIA1	P53893	1110 aa		6.06	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms