RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIC96	YFR002W	SIS2	P36024	562 aa		4.72	□□□□□ -1.65
NIC96	YFR002W	SUM1	P46676	1062 aa		4.72	□□□□□ -1.65
NIC96	YFR002W	TY1A-DR3	Q12441	440 aa		4.72	□□□□□ -1.65
NIC96	YFR002W	KTR7	P40504	517 aa		4.72	□□□□□ -1.65
NIC96	YFR002W	NAM8	Q00539	523 aa	Known RBP	4.72	□□□□□ -1.65
NIC96	YFR002W	PDI1	P17967	522 aa	Known RBP	4.71	□□□□□ -1.66
NIC96	YFR002W	ROG3	P43602	733 aa		4.71	□□□□□ -1.66
NIC96	YFR002W	YPQ2	Q06328	317 aa		4.71	□□□□□ -1.66
NIC96	YFR002W	TSC13	Q99190	310 aa		4.71	□□□□□ -1.66
NIC96	YFR002W	TY1A-MR1	Q04215	440 aa		4.71	□□□□□ -1.66
NIC96	YFR002W	CCP1	P00431	361 aa		4.7	□□□□□ -1.66
NIC96	YFR002W	RPS6A	P0CX37	236 aa	Known RBP	4.7	□□□□□ -1.66
NIC96	YFR002W	RPS6B	P0CX38	236 aa	Predicted RBP	4.7	□□□□□ -1.66
NIC96	YFR002W	YFL034W	P43564	1073 aa		4.7	□□□□□ -1.66
NIC96	YFR002W	ACS2	P52910	683 aa	Known RBP	4.7	□□□□□ -1.66
NIC96	YFR002W	NTH2	P35172	780 aa		4.7	□□□□□ -1.66
NIC96	YFR002W	PHO87	P25360	923 aa		4.69	□□□□□ -1.66
NIC96	YFR002W	CPS1	P27614	576 aa		4.69	□□□□□ -1.66
NIC96	YFR002W	TGL4	P36165	910 aa		4.69	□□□□□ -1.66
NIC96	YFR002W	GAL2	P13181	574 aa		4.68	□□□□□ -1.66
NIC96	YFR002W	SHM1	P37292	490 aa	Predicted RBP	4.68	□□□□□ -1.66
NIC96	YFR002W	JJJ2	P46997	583 aa		4.68	□□□□□ -1.66
NIC96	YFR002W	AHP1	P38013	176 aa	Known RBP	4.67	□□□□□ -1.66
NIC96	YFR002W	ALA1	P40825	983 aa	Known RBP	4.67	□□□□□ -1.66
NIC96	YFR002W	UBP15	P50101	1230 aa		4.67	□□□□□ -1.66
NIC96	YFR002W	ROM1	P53046	1155 aa		4.67	□□□□□ -1.66
NIC96	YFR002W	HAP4	P14064	554 aa		4.66	□□□□□ -1.66
NIC96	YFR002W	GAS4	Q08271	471 aa		4.66	□□□□□ -1.66
NIC96	YFR002W	CYT1	P07143	309 aa		4.66	□□□□□ -1.66
NIC96	YFR002W	MCM1	P11746	286 aa		4.66	□□□□□ -1.66
NIC96	YFR002W	PUP1	P25043	261 aa		4.66	□□□□□ -1.66
NIC96	YFR002W	HPF1	Q05164	967 aa		4.66	□□□□□ -1.66
NIC96	YFR002W	RPS31	P05759	152 aa	Known RBP	4.65	□□□□□ -1.66
NIC96	YFR002W	UBP1	P25037	809 aa		4.65	□□□□□ -1.67
NIC96	YFR002W	IRE1	P32361	1115 aa		4.65	□□□□□ -1.67
NIC96	YFR002W	YNL165W	P53891	406 aa		4.65	□□□□□ -1.67
NIC96	YFR002W	ECM23	Q02710	187 aa		4.65	□□□□□ -1.67
NIC96	YFR002W	CUZ1	P53899	274 aa		4.64	□□□□□ -1.67
NIC96	YFR002W	RLF2	Q12495	606 aa		4.64	□□□□□ -1.67
NIC96	YFR002W	YGR035C	P53222	116 aa		4.64	□□□□□ -1.67
NIC96	YFR002W	PSH1	Q12161	406 aa		4.64	□□□□□ -1.67
NIC96	YFR002W	PDC6	P26263	563 aa	Known RBP	4.63	□□□□□ -1.67
NIC96	YFR002W	UBX7	P38349	436 aa		4.62	□□□□□ -1.67
NIC96	YFR002W	RGA2	Q06407	1009 aa		4.62	□□□□□ -1.67
NIC96	YFR002W	NOB1	Q08444	459 aa	Known RBP	4.62	□□□□□ -1.67
NIC96	YFR002W	DIT1	P21623	536 aa		4.61	□□□□□ -1.67
NIC96	YFR002W	SSA4	P22202	642 aa	Known RBP	4.61	□□□□□ -1.67
NIC96	YFR002W	NGR1	P32831	672 aa	Known RBP	4.61	□□□□□ -1.67
NIC96	YFR002W	YML083C	Q04526	418 aa		4.61	□□□□□ -1.67
NIC96	YFR002W	MLF3	P32047	452 aa		4.6	□□□□□ -1.67
NIC96	YFR002W	SUV3	P32580	737 aa		4.6	□□□□□ -1.67
NIC96	YFR002W	ALD2	P47771	506 aa		4.6	□□□□□ -1.67
NIC96	YFR002W	LEU1	P07264	779 aa	Known RBP	4.6	□□□□□ -1.67
NIC96	YFR002W	TRK2	P28584	889 aa		4.6	□□□□□ -1.67
NIC96	YFR002W	HXT5	P38695	592 aa		4.6	□□□□□ -1.67
NIC96	YFR002W	JJJ3	P47138	172 aa		4.6	□□□□□ -1.67
NIC96	YFR002W	LYS5	P50113	272 aa		4.6	□□□□□ -1.67
NIC96	YFR002W	Q0182	Q9ZZW1	134 aa		4.6	□□□□□ -1.67
NIC96	YFR002W	VAN1	P23642	535 aa		4.59	□□□□□ -1.67
NIC96	YFR002W	YMR265C	Q03508	461 aa	Known RBP	4.59	□□□□□ -1.67
NIC96	YFR002W	DPH6	Q12429	685 aa		4.59	□□□□□ -1.67
NIC96	YFR002W	CEM1	P39525	442 aa		4.58	□□□□□ -1.68
NIC96	YFR002W	KRE33	P53914	1056 aa	Known RBP	4.58	□□□□□ -1.68
NIC96	YFR002W	SYT1	Q06836	1226 aa		4.58	□□□□□ -1.68
NIC96	YFR002W	SUB2	Q07478	446 aa	Known RBP	4.58	□□□□□ -1.68
NIC96	YFR002W	YDR461C-A	Q2V2P7	80 aa		4.58	□□□□□ -1.68
NIC96	YFR002W	MRPL16	P38064	232 aa		4.57	□□□□□ -1.68
NIC96	YFR002W	TRS33	Q99394	268 aa		4.57	□□□□□ -1.68
NIC96	YFR002W	CAB1	Q04430	367 aa		4.56	□□□□□ -1.68
NIC96	YFR002W	UTP4	Q06679	776 aa	Known RBP	4.56	□□□□□ -1.68
NIC96	YFR002W	STB3	Q12427	513 aa		4.56	□□□□□ -1.68
NIC96	YFR002W	SCD5	P34758	872 aa		4.56	□□□□□ -1.68
NIC96	YFR002W	YTA6	P40328	754 aa		4.56	□□□□□ -1.68
NIC96	YFR002W	ADE12	P80210	433 aa	Known RBP	4.56	□□□□□ -1.68
NIC96	YFR002W	SPR3	P41901	512 aa		4.55	□□□□□ -1.68
NIC96	YFR002W	RGP1	P16664	663 aa		4.55	□□□□□ -1.68
NIC96	YFR002W	PUF6	Q04373	656 aa	Known RBP	4.54	□□□□□ -1.68
NIC96	YFR002W	CWC15	Q03772	175 aa	Known RBP	4.54	□□□□□ -1.68
NIC96	YFR002W	ALD4	P46367	519 aa	Known RBP	4.53	□□□□□ -1.68
NIC96	YFR002W	CWH41	P53008	833 aa		4.53	□□□□□ -1.68
NIC96	YFR002W	YBR197C	P38306	217 aa		4.53	□□□□□ -1.68
NIC96	YFR002W	MTO1	P53070	669 aa		4.53	□□□□□ -1.68
NIC96	YFR002W	FPS1	P23900	669 aa		4.52	□□□□□ -1.69
NIC96	YFR002W	TPS3	P38426	1054 aa	Known RBP	4.52	□□□□□ -1.69
NIC96	YFR002W	MSC7	P38694	644 aa		4.52	□□□□□ -1.69
NIC96	YFR002W	FOX2	Q02207	900 aa	Known RBP	4.52	□□□□□ -1.69
NIC96	YFR002W	PUN1	Q06991	263 aa		4.52	□□□□□ -1.69
NIC96	YFR002W	RPC31	P17890	251 aa		4.51	□□□□□ -1.69
NIC96	YFR002W	MRPL33	P20084	86 aa		4.51	□□□□□ -1.69
NIC96	YFR002W	KAP122	P32767	1081 aa		4.51	□□□□□ -1.69
NIC96	YFR002W	SKP1	P52286	194 aa		4.51	□□□□□ -1.69
NIC96	YFR002W	SRS2	P12954	1174 aa		4.51	□□□□□ -1.69
NIC96	YFR002W	QDR2	P40474	542 aa		4.51	□□□□□ -1.69
NIC96	YFR002W	CUS1	Q02554	436 aa	Predicted RBP	4.5	□□□□□ -1.69
NIC96	YFR002W	TY1A-DR2	Q03964	440 aa	Known RBP	4.5	□□□□□ -1.69
NIC96	YFR002W	GPM1	P00950	247 aa	Known RBP	4.5	□□□□□ -1.69
NIC96	YFR002W	VMA3	P25515	160 aa		4.5	□□□□□ -1.69
NIC96	YFR002W	ISC10	P32645	267 aa		4.5	□□□□□ -1.69
NIC96	YFR002W	YFL066C	P43538	392 aa		4.49	□□□□□ -1.69
NIC96	YFR002W	PNP1	Q05788	311 aa		4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 80.8 ms