RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP60	YAR002W	TUB4	P53378	473 aa		4.61	□□□□□ -1.67
NUP60	YAR002W	SAS4	Q04003	481 aa		4.61	□□□□□ -1.67
NUP60	YAR002W	CHC1	P22137	1653 aa	Known RBP	4.61	□□□□□ -1.67
NUP60	YAR002W	PAF1	P38351	445 aa		4.61	□□□□□ -1.67
NUP60	YAR002W	BIM1	P40013	344 aa		4.61	□□□□□ -1.67
NUP60	YAR002W	GYP1	Q08484	637 aa		4.61	□□□□□ -1.67
NUP60	YAR002W	RAS1	P01119	309 aa		4.6	□□□□□ -1.67
NUP60	YAR002W	SPT16	P32558	1035 aa	Known RBP	4.6	□□□□□ -1.67
NUP60	YAR002W	AGE1	Q04412	482 aa		4.6	□□□□□ -1.67
NUP60	YAR002W	VMR1	P38735	1592 aa		4.59	□□□□□ -1.68
NUP60	YAR002W	MAK16	P10962	306 aa	Predicted RBP	4.58	□□□□□ -1.68
NUP60	YAR002W	SPT5	P27692	1063 aa	Known RBP	4.58	□□□□□ -1.68
NUP60	YAR002W	RPL34B	P40525	121 aa	Known RBP	4.58	□□□□□ -1.68
NUP60	YAR002W	RRN7	P40992	514 aa		4.58	□□□□□ -1.68
NUP60	YAR002W	RPA14	P50106	137 aa		4.58	□□□□□ -1.68
NUP60	YAR002W	RAV1	P47104	1357 aa		4.58	□□□□□ -1.68
NUP60	YAR002W	ATG32	P40458	529 aa		4.57	□□□□□ -1.68
NUP60	YAR002W	ALR1	Q08269	859 aa		4.57	□□□□□ -1.68
NUP60	YAR002W	YDL206W	Q12424	762 aa		4.57	□□□□□ -1.68
NUP60	YAR002W	PDR11	P40550	1411 aa		4.57	□□□□□ -1.68
NUP60	YAR002W	NUP188	P52593	1655 aa	Known RBP	4.57	□□□□□ -1.68
NUP60	YAR002W	TRK1	P12685	1235 aa		4.57	□□□□□ -1.68
NUP60	YAR002W	BIO2	P32451	375 aa		4.57	□□□□□ -1.68
NUP60	YAR002W	PAC1	P39946	494 aa	Known RBP	4.57	□□□□□ -1.68
NUP60	YAR002W	KXD1	P53158	218 aa		4.57	□□□□□ -1.68
NUP60	YAR002W	ITT1	Q04638	464 aa		4.57	□□□□□ -1.68
NUP60	YAR002W	IML1	P47170	1584 aa		4.56	□□□□□ -1.68
NUP60	YAR002W	SEC3	P33332	1336 aa	Known RBP	4.56	□□□□□ -1.68
NUP60	YAR002W	RTC1	Q08281	1341 aa		4.56	□□□□□ -1.68
NUP60	YAR002W	BNI1	P41832	1953 aa		4.56	□□□□□ -1.68
NUP60	YAR002W	MRF1	P30775	413 aa	Predicted RBP	4.56	□□□□□ -1.68
NUP60	YAR002W	NAF1	P53919	492 aa	Known RBP	4.56	□□□□□ -1.68
NUP60	YAR002W	YPR097W	Q06839	1073 aa		4.56	□□□□□ -1.68
NUP60	YAR002W	DNF2	Q12675	1612 aa		4.56	□□□□□ -1.68
NUP60	YAR002W	TIF1	P10081	395 aa	Known RBP	4.55	□□□□□ -1.68
NUP60	YAR002W	YNL108C	P53929	270 aa		4.55	□□□□□ -1.68
NUP60	YAR002W	SUP45	P12385	437 aa	Known RBP	4.54	□□□□□ -1.68
NUP60	YAR002W	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.54	□□□□□ -1.68
NUP60	YAR002W	PDC1	P06169	563 aa	Known RBP	4.54	□□□□□ -1.68
NUP60	YAR002W	HXT10	P43581	546 aa		4.54	□□□□□ -1.68
NUP60	YAR002W	YPL062W	Q02781	134 aa		4.54	□□□□□ -1.68
NUP60	YAR002W	ERG12	P07277	443 aa		4.53	□□□□□ -1.68
NUP60	YAR002W	YDJ1	P25491	409 aa	Known RBP	4.53	□□□□□ -1.68
NUP60	YAR002W	TPD3	P31383	635 aa		4.53	□□□□□ -1.68
NUP60	YAR002W	RTG2	P32608	588 aa	Known RBP	4.53	□□□□□ -1.68
NUP60	YAR002W	ENP1	P38333	483 aa	Known RBP	4.53	□□□□□ -1.68
NUP60	YAR002W	YPP1	P46951	817 aa		4.53	□□□□□ -1.68
NUP60	YAR002W	MHP1	P43638	1398 aa		4.53	□□□□□ -1.68
NUP60	YAR002W	SPT7	P35177	1332 aa		4.52	□□□□□ -1.69
NUP60	YAR002W	ENO2	P00925	437 aa	Known RBP	4.51	□□□□□ -1.69
NUP60	YAR002W	TAF5	P38129	798 aa		4.51	□□□□□ -1.69
NUP60	YAR002W	ORC1	P54784	914 aa	Predicted RBP	4.51	□□□□□ -1.69
NUP60	YAR002W	URN1	Q06525	465 aa	Known RBP	4.51	□□□□□ -1.69
NUP60	YAR002W	MOD5	P07884	428 aa		4.5	□□□□□ -1.69
NUP60	YAR002W	ESL2	P36168	1195 aa		4.5	□□□□□ -1.69
NUP60	YAR002W	IPL1	P38991	367 aa		4.5	□□□□□ -1.69
NUP60	YAR002W	RRD1	P40454	393 aa	Known RBP	4.5	□□□□□ -1.69
NUP60	YAR002W	YPR204W	Q08995	1032 aa		4.5	□□□□□ -1.69
NUP60	YAR002W	NUP192	P47054	1683 aa		4.5	□□□□□ -1.69
NUP60	YAR002W	YLR419W	Q06698	1435 aa	Known RBP	4.5	□□□□□ -1.69
NUP60	YAR002W	TEC1	P18412	486 aa		4.5	□□□□□ -1.69
NUP60	YAR002W	AMS1	P22855	1083 aa		4.5	□□□□□ -1.69
NUP60	YAR002W	TYS1	P36421	394 aa	Known RBP	4.5	□□□□□ -1.69
NUP60	YAR002W	FIG4	P42837	879 aa		4.5	□□□□□ -1.69
NUP60	YAR002W	MCM16	Q12262	181 aa		4.5	□□□□□ -1.69
NUP60	YAR002W	GUT2	P32191	649 aa		4.49	□□□□□ -1.69
NUP60	YAR002W	KIP3	P53086	805 aa	Known RBP	4.49	□□□□□ -1.69
NUP60	YAR002W	YEL077C	Q3E7X8	1277 aa		4.49	□□□□□ -1.69
NUP60	YAR002W	VAC17	P25591	423 aa		4.48	□□□□□ -1.69
NUP60	YAR002W	YAP3	P38749	330 aa		4.48	□□□□□ -1.69
NUP60	YAR002W	MRX12	P47084	519 aa		4.48	□□□□□ -1.69
NUP60	YAR002W	RIM21	P48565	533 aa		4.48	□□□□□ -1.69
NUP60	YAR002W	STE20	Q03497	939 aa	Known RBP	4.48	□□□□□ -1.69
NUP60	YAR002W	ENO1	P00924	437 aa	Known RBP	4.47	□□□□□ -1.69
NUP60	YAR002W	SDH2	P21801	266 aa		4.47	□□□□□ -1.69
NUP60	YAR002W	SSA4	P22202	642 aa	Known RBP	4.47	□□□□□ -1.69
NUP60	YAR002W	SIS2	P36024	562 aa		4.47	□□□□□ -1.69
NUP60	YAR002W	MRX10	Q05648	414 aa		4.47	□□□□□ -1.69
NUP60	YAR002W	FRA1	Q07825	749 aa		4.47	□□□□□ -1.69
NUP60	YAR002W	HAP1	P0CE41	1502 aa		4.47	□□□□□ -1.69
NUP60	YAR002W	TTI1	P36097	1038 aa		4.46	□□□□□ -1.69
NUP60	YAR002W	EMP47	P43555	445 aa		4.46	□□□□□ -1.69
NUP60	YAR002W	BDP1	P46678	594 aa		4.46	□□□□□ -1.69
NUP60	YAR002W	KIP2	P28743	706 aa		4.46	□□□□□ -1.7
NUP60	YAR002W	SCT1	P32784	759 aa		4.46	□□□□□ -1.7
NUP60	YAR002W	ATG3	P40344	310 aa		4.46	□□□□□ -1.7
NUP60	YAR002W	PDS5	Q04264	1277 aa		4.46	□□□□□ -1.7
NUP60	YAR002W	YPR084W	Q06821	456 aa		4.46	□□□□□ -1.7
NUP60	YAR002W	BCK1	Q01389	1478 aa		4.46	□□□□□ -1.7
NUP60	YAR002W	SPE2	P21182	396 aa		4.45	□□□□□ -1.7
NUP60	YAR002W	ISF1	P32488	338 aa		4.45	□□□□□ -1.7
NUP60	YAR002W	IXR1	P33417	597 aa		4.45	□□□□□ -1.7
NUP60	YAR002W	FRK1	Q03002	865 aa	Predicted RBP	4.45	□□□□□ -1.7
NUP60	YAR002W	ENV9	Q08651	330 aa		4.45	□□□□□ -1.7
NUP60	YAR002W	RAD9	P14737	1309 aa		4.45	□□□□□ -1.7
NUP60	YAR002W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	4.44	□□□□□ -1.7	not detected
NUP60	YAR002W	CPS1	P27614	576 aa		4.44	□□□□□ -1.7
NUP60	YAR002W	CST6	P40535	587 aa		4.44	□□□□□ -1.7
NUP60	YAR002W	ALD4	P46367	519 aa	Known RBP	4.44	□□□□□ -1.7
NUP60	YAR002W	SYH1	Q02875	849 aa	Known RBP	4.44	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms