RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 TOM1O60784 492 aa20.69■□□□□ 0.9
PNKP-228ENST00000637325 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.69■□□□□ 0.9
PNKP-228ENST00000637325 SLC26A8Q96RN1 970 aa20.69■□□□□ 0.9
PNKP-228ENST00000637325 SENP3Q9H4L4 574 aaPredicted RBP20.69■□□□□ 0.9
PNKP-228ENST00000637325 ZFYVE9O95405 1425 aa20.68■□□□□ 0.9
PNKP-228ENST00000637325 SCAF1Q9H7N4 1312 aaKnown RBP20.67■□□□□ 0.9
PNKP-228ENST00000637325 LRRC7Q96NW7 1537 aa20.67■□□□□ 0.9
PNKP-228ENST00000637325 KIF1BO60333 1816 aa20.67■□□□□ 0.9
PNKP-228ENST00000637325 NUTM2DQ5VT03 806 aaPredicted RBP20.66■□□□□ 0.9
PNKP-228ENST00000637325 SLC4A1APQ9BWU0 796 aaKnown RBP20.66■□□□□ 0.9
PNKP-228ENST00000637325 PLEKHG1Q9ULL1 1385 aa20.65■□□□□ 0.9
PNKP-228ENST00000637325 PIP4K2BP78356 416 aa20.64■□□□□ 0.89
PNKP-228ENST00000637325 KCNA6P17658 529 aa20.63■□□□□ 0.89
PNKP-228ENST00000637325 ZNF326Q5BKZ1 582 aaKnown RBP20.63■□□□□ 0.89
PNKP-228ENST00000637325 XIRP1Q702N8 1843 aaKnown RBP20.62■□□□□ 0.89
PNKP-228ENST00000637325 CLTCL1P53675 1640 aa20.61■□□□□ 0.89
PNKP-228ENST00000637325 TRPM2O94759 1503 aa20.61■□□□□ 0.89
PNKP-228ENST00000637325 CHD2O14647 1828 aaKnown RBP20.6■□□□□ 0.89
PNKP-228ENST00000637325 PROSER2Q86WR7 435 aaPredicted RBP20.59■□□□□ 0.89
PNKP-228ENST00000637325 TBX22Q9Y458 520 aa20.57■□□□□ 0.88
PNKP-228ENST00000637325 DIP2AQ14689 1571 aa20.55■□□□□ 0.88
PNKP-228ENST00000637325 NWD1Q149M9 1564 aa20.55■□□□□ 0.88
PNKP-228ENST00000637325 ACIN1Q9UKV3 1341 aaKnown RBP20.54■□□□□ 0.88
PNKP-228ENST00000637325 SETD5Q9C0A6 1442 aa20.54■□□□□ 0.88
PNKP-228ENST00000637325 MPHOSPH9Q99550 1183 aa20.54■□□□□ 0.88
PNKP-228ENST00000637325 TMEM94Q12767 1356 aa20.54■□□□□ 0.88
PNKP-228ENST00000637325 FOXD1Q16676 465 aa20.53■□□□□ 0.88
PNKP-228ENST00000637325 NKTRP30414 1462 aaKnown RBP20.53■□□□□ 0.88
PNKP-228ENST00000637325 RBM33Q96EV2 1170 aaKnown RBP20.52■□□□□ 0.88
PNKP-228ENST00000637325 ALKQ9UM73 1620 aa20.52■□□□□ 0.88
PNKP-228ENST00000637325 ADAMTS13Q76LX8 1427 aa20.52■□□□□ 0.87
PNKP-228ENST00000637325 HSPA1LP34931 641 aa20.5■□□□□ 0.87
PNKP-228ENST00000637325 NEXMIFQ5QGS0 1516 aa20.49■□□□□ 0.87
PNKP-228ENST00000637325 PIK3R4Q99570 1358 aa20.48■□□□□ 0.87
PNKP-228ENST00000637325 MSH6P52701 1360 aa20.46■□□□□ 0.87
PNKP-228ENST00000637325 SETBP1Q9Y6X0 1596 aa20.46■□□□□ 0.87
PNKP-228ENST00000637325 NRXN3Q9Y4C0 1643 aa20.46■□□□□ 0.87
PNKP-228ENST00000637325 C14orf37Q86TY3 774 aa20.46■□□□□ 0.87
PNKP-228ENST00000637325 RAB3GAP2Q9H2M9 1393 aa20.46■□□□□ 0.87
PNKP-228ENST00000637325 CCDC144AA2RUR9 1427 aa20.45■□□□□ 0.86
PNKP-228ENST00000637325 VGFO15240 615 aaPredicted RBP20.45■□□□□ 0.86
PNKP-228ENST00000637325 AMOTL2Q9Y2J4 779 aa20.45■□□□□ 0.86
PNKP-228ENST00000637325 RPGRIP1LQ68CZ1 1315 aa20.45■□□□□ 0.86
PNKP-228ENST00000637325 DISP3Q9P2K9 1392 aa20.45■□□□□ 0.86
PNKP-228ENST00000637325 PPLO60437 1756 aa20.44■□□□□ 0.86
PNKP-228ENST00000637325 RGL3Q3MIN7 710 aa20.4■□□□□ 0.86
PNKP-228ENST00000637325 PTPRUQ92729 1446 aa20.4■□□□□ 0.86
PNKP-228ENST00000637325 NCOA3Q9Y6Q9 1424 aa20.4■□□□□ 0.86
PNKP-228ENST00000637325 METP08581 1390 aa20.38■□□□□ 0.85
PNKP-228ENST00000637325 FAM135BQ49AJ0 1406 aa20.37■□□□□ 0.85
PNKP-228ENST00000637325 XRN1Q8IZH2 1706 aaKnown RBP20.37■□□□□ 0.85
PNKP-228ENST00000637325 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.37■□□□□ 0.85
PNKP-228ENST00000637325 ROBO1Q9Y6N7 1651 aa20.37■□□□□ 0.85
PNKP-228ENST00000637325 C19orf44Q9H6X5 657 aa20.36■□□□□ 0.85
PNKP-228ENST00000637325 SLAIN2Q9P270 581 aa20.36■□□□□ 0.85
PNKP-228ENST00000637325 ATF3P18847 181 aa20.35■□□□□ 0.85
PNKP-228ENST00000637325 IFT172Q9UG01 1749 aa20.34■□□□□ 0.85
PNKP-228ENST00000637325 CADPS2Q86UW7 1296 aa20.34■□□□□ 0.85
PNKP-228ENST00000637325 SETD1AO15047 1707 aaKnown RBP20.33■□□□□ 0.85
PNKP-228ENST00000637325 HRCP23327 699 aa20.33■□□□□ 0.85
PNKP-228ENST00000637325 SPATA31E1Q6ZUB1 1445 aa20.33■□□□□ 0.84
PNKP-228ENST00000637325 ANKRD30BQ9BXX2 1392 aa20.31■□□□□ 0.84
PNKP-228ENST00000637325 ADGRF5Q8IZF2 1346 aa20.3■□□□□ 0.84
PNKP-228ENST00000637325 PHLPP1O60346 1717 aa20.29■□□□□ 0.84
PNKP-228ENST00000637325 MED1Q15648 1581 aaPredicted RBP20.29■□□□□ 0.84
PNKP-228ENST00000637325 DCCP43146 1447 aa20.25■□□□□ 0.83
PNKP-228ENST00000637325 NALCNQ8IZF0 1738 aa20.24■□□□□ 0.83
PNKP-228ENST00000637325 PTCH1Q13635 1447 aa20.23■□□□□ 0.83
PNKP-228ENST00000637325 PHF23Q9BUL5 403 aaPredicted RBP20.23■□□□□ 0.83
PNKP-228ENST00000637325 ADGRL3Q9HAR2 1447 aa20.23■□□□□ 0.83
PNKP-228ENST00000637325 STK26Q9P289 416 aa20.22■□□□□ 0.83
PNKP-228ENST00000637325 ROBO2Q9HCK4 1378 aa20.21■□□□□ 0.83
PNKP-228ENST00000637325 ILDR2Q71H61 639 aa20.21■□□□□ 0.83
PNKP-228ENST00000637325 PIK3C2GO75747 1445 aa20.2■□□□□ 0.82
PNKP-228ENST00000637325 TMEM132EQ6IEE7 984 aa20.19■□□□□ 0.82
PNKP-228ENST00000637325 MST1RQ04912 1400 aa20.18■□□□□ 0.82
PNKP-228ENST00000637325 PRAG1Q86YV5 1406 aa20.18■□□□□ 0.82
PNKP-228ENST00000637325 MYOM2P54296 1465 aa20.18■□□□□ 0.82
PNKP-228ENST00000637325 BRINP3Q76B58 766 aa20.17■□□□□ 0.82
PNKP-228ENST00000637325 LAMC1P11047 1609 aa20.16■□□□□ 0.82
PNKP-228ENST00000637325 KNDC1Q76NI1 1749 aa20.16■□□□□ 0.82
PNKP-228ENST00000637325 C14orf93Q9H972 538 aaKnown RBP20.16■□□□□ 0.82
PNKP-228ENST00000637325 KDM2AQ9Y2K7 1162 aa20.16■□□□□ 0.82
PNKP-228ENST00000637325 LRPPRCP42704 1394 aaKnown RBP20.16■□□□□ 0.82
PNKP-228ENST00000637325 COL16A1Q07092 1604 aaPredicted RBP20.16■□□□□ 0.82
PNKP-228ENST00000637325 AHDC1Q5TGY3 1603 aaPredicted RBP20.16■□□□□ 0.82
PNKP-228ENST00000637325 JCADQ9P266 1359 aa20.15■□□□□ 0.82
PNKP-228ENST00000637325 ASXL1Q8IXJ9 1541 aa20.14■□□□□ 0.81
PNKP-228ENST00000637325 NRXN1Q9ULB1 1477 aa20.14■□□□□ 0.81
PNKP-228ENST00000637325 CFAP70Q5T0N1 1121 aa20.14■□□□□ 0.81
PNKP-228ENST00000637325 DCAF11Q8TEB1 546 aa20.14■□□□□ 0.81
PNKP-228ENST00000637325 YTHDC2Q9H6S0 1430 aaKnown RBP20.13■□□□□ 0.81
PNKP-228ENST00000637325 ABCC11Q96J66 1382 aa20.13■□□□□ 0.81
PNKP-228ENST00000637325 WAPLQ7Z5K2 1190 aa20.13■□□□□ 0.81
PNKP-228ENST00000637325 DHX57Q6P158 1386 aaKnown RBP20.12■□□□□ 0.81
PNKP-228ENST00000637325 TECPR2O15040 1411 aa20.11■□□□□ 0.81
PNKP-228ENST00000637325 NHSL1Q5SYE7 1610 aa20.11■□□□□ 0.81
PNKP-228ENST00000637325 C1orf167Q5SNV9 1468 aa20.11■□□□□ 0.81
PNKP-228ENST00000637325 STAC3Q96MF2 364 aa20.1■□□□□ 0.81
PNKP-228ENST00000637325 SHPRHQ149N8 1683 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms