RNA–Protein interactions for RNA: ENST00000626274.2

PNKP-219, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 752 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-219ENST00000626274 RIMS2Q9UQ26 1411 aa29.65■■■□□ 2.34
PNKP-219ENST00000626274 FOXD1Q16676 465 aa29.65■■■□□ 2.34
PNKP-219ENST00000626274 CERKQ8TCT0 537 aa29.65■■■□□ 2.34
PNKP-219ENST00000626274 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.61■■■□□ 2.33
PNKP-219ENST00000626274 PPP1R15AO75807 674 aaPredicted RBP29.59■■■□□ 2.33
PNKP-219ENST00000626274 ZNF326Q5BKZ1 582 aaKnown RBP29.56■■■□□ 2.32
PNKP-219ENST00000626274 PLEKHG1Q9ULL1 1385 aa29.55■■■□□ 2.32
PNKP-219ENST00000626274 BCANQ96GW7 911 aa29.54■■■□□ 2.32
PNKP-219ENST00000626274 CCDC144AA2RUR9 1427 aa29.54■■■□□ 2.32
PNKP-219ENST00000626274 NUTM2DQ5VT03 806 aaPredicted RBP29.52■■■□□ 2.32
PNKP-219ENST00000626274 CPS1P31327 1500 aa29.51■■■□□ 2.32
PNKP-219ENST00000626274 SLC26A8Q96RN1 970 aa29.5■■■□□ 2.31
PNKP-219ENST00000626274 STRCP1A6NGW2 1772 aa29.49■■■□□ 2.31
PNKP-219ENST00000626274 IQSEC2Q5JU85 1478 aa29.48■■■□□ 2.31
PNKP-219ENST00000626274 TRIM26Q12899 539 aaPredicted RBP29.48■■■□□ 2.31
PNKP-219ENST00000626274 NEXMIFQ5QGS0 1516 aa29.47■■■□□ 2.31
PNKP-219ENST00000626274 FBXO41Q8TF61 875 aa29.47■■■□□ 2.31
PNKP-219ENST00000626274 SENP3Q9H4L4 574 aaPredicted RBP29.47■■■□□ 2.31
PNKP-219ENST00000626274 ILDR1Q86SU0 546 aaPredicted RBP29.43■■■□□ 2.3
PNKP-219ENST00000626274 RPGRIP1LQ68CZ1 1315 aa29.43■■■□□ 2.3
PNKP-219ENST00000626274 TBX22Q9Y458 520 aa29.41■■■□□ 2.3
PNKP-219ENST00000626274 DIP2AQ14689 1571 aa29.4■■■□□ 2.3
PNKP-219ENST00000626274 SPATA31E1Q6ZUB1 1445 aa29.4■■■□□ 2.3
PNKP-219ENST00000626274 ADAMTS13Q76LX8 1427 aa29.4■■■□□ 2.3
PNKP-219ENST00000626274 PPLO60437 1756 aa29.4■■■□□ 2.3
PNKP-219ENST00000626274 ANKRD30BQ9BXX2 1392 aa29.39■■■□□ 2.3
PNKP-219ENST00000626274 KCNA6P17658 529 aa29.39■■■□□ 2.3
PNKP-219ENST00000626274 VGFO15240 615 aaPredicted RBP29.38■■■□□ 2.29
PNKP-219ENST00000626274 SETBP1Q9Y6X0 1596 aa29.38■■■□□ 2.29
PNKP-219ENST00000626274 CHD2O14647 1828 aaKnown RBP29.37■■■□□ 2.29
PNKP-219ENST00000626274 NRXN3Q9Y4C0 1643 aa29.36■■■□□ 2.29
PNKP-219ENST00000626274 RGL3Q3MIN7 710 aa29.36■■■□□ 2.29
PNKP-219ENST00000626274 LRRC7Q96NW7 1537 aa29.35■■■□□ 2.29
PNKP-219ENST00000626274 NWD1Q149M9 1564 aa29.35■■■□□ 2.29
PNKP-219ENST00000626274 IFT172Q9UG01 1749 aa29.32■■■□□ 2.28
PNKP-219ENST00000626274 PIK3R4Q99570 1358 aa29.32■■■□□ 2.28
PNKP-219ENST00000626274 NKTRP30414 1462 aaKnown RBP29.29■■■□□ 2.28
PNKP-219ENST00000626274 XIRP1Q702N8 1843 aaKnown RBP29.28■■■□□ 2.28
PNKP-219ENST00000626274 PROSER2Q86WR7 435 aaPredicted RBP29.26■■■□□ 2.27
PNKP-219ENST00000626274 UBAP1LF5GYI3 381 aa29.25■■■□□ 2.27
PNKP-219ENST00000626274 ADGRF5Q8IZF2 1346 aa29.22■■■□□ 2.27
PNKP-219ENST00000626274 ALKQ9UM73 1620 aa29.22■■■□□ 2.27
PNKP-219ENST00000626274 TMEM94Q12767 1356 aa29.22■■■□□ 2.27
PNKP-219ENST00000626274 PTPRUQ92729 1446 aa29.21■■■□□ 2.27
PNKP-219ENST00000626274 SETD1AO15047 1707 aaKnown RBP29.21■■■□□ 2.27
PNKP-219ENST00000626274 AMOTL2Q9Y2J4 779 aa29.21■■■□□ 2.27
PNKP-219ENST00000626274 METP08581 1390 aa29.21■■■□□ 2.27
PNKP-219ENST00000626274 TOM1O60784 492 aa29.2■■■□□ 2.26
PNKP-219ENST00000626274 XRN1Q8IZH2 1706 aaKnown RBP29.18■■■□□ 2.26
PNKP-219ENST00000626274 MYOM2P54296 1465 aa29.17■■■□□ 2.26
PNKP-219ENST00000626274 RBM33Q96EV2 1170 aaKnown RBP29.16■■■□□ 2.26
PNKP-219ENST00000626274 PIK3C2GO75747 1445 aa29.13■■■□□ 2.25
PNKP-219ENST00000626274 DHX57Q6P158 1386 aaKnown RBP29.13■■■□□ 2.25
PNKP-219ENST00000626274 NCOA3Q9Y6Q9 1424 aa29.11■■■□□ 2.25
PNKP-219ENST00000626274 NRXN1Q9ULB1 1477 aa29.11■■■□□ 2.25
PNKP-219ENST00000626274 DCAF11Q8TEB1 546 aa29.09■■■□□ 2.25
PNKP-219ENST00000626274 STAC3Q96MF2 364 aa29.09■■■□□ 2.25
PNKP-219ENST00000626274 MSH6P52701 1360 aa29.09■■■□□ 2.25
PNKP-219ENST00000626274 PIP4K2BP78356 416 aa29.07■■■□□ 2.24
PNKP-219ENST00000626274 SCAF1Q9H7N4 1312 aaKnown RBP29.07■■■□□ 2.24
PNKP-219ENST00000626274 LAMC1P11047 1609 aa29.06■■■□□ 2.24
PNKP-219ENST00000626274 C14orf37Q86TY3 774 aa29.06■■■□□ 2.24
PNKP-219ENST00000626274 KDM2AQ9Y2K7 1162 aa29.06■■■□□ 2.24
PNKP-219ENST00000626274 C14orf93Q9H972 538 aaKnown RBP29.05■■■□□ 2.24
PNKP-219ENST00000626274 PRAG1Q86YV5 1406 aa29.03■■■□□ 2.24
PNKP-219ENST00000626274 PTCH1Q13635 1447 aa29.02■■■□□ 2.24
PNKP-219ENST00000626274 CFAP70Q5T0N1 1121 aa29.01■■■□□ 2.23
PNKP-219ENST00000626274 C19orf44Q9H6X5 657 aa29.01■■■□□ 2.23
PNKP-219ENST00000626274 SIPA1L2Q9P2F8 1722 aaPredicted RBP29■■■□□ 2.23
PNKP-219ENST00000626274 ASXL1Q8IXJ9 1541 aa29■■■□□ 2.23
PNKP-219ENST00000626274 SIN3AQ96ST3 1273 aa29■■■□□ 2.23
PNKP-219ENST00000626274 PCGF6Q9BYE7 350 aa29■■■□□ 2.23
PNKP-219ENST00000626274 TMEM132EQ6IEE7 984 aa28.99■■■□□ 2.23
PNKP-219ENST00000626274 LRPPRCP42704 1394 aaKnown RBP28.99■■■□□ 2.23
PNKP-219ENST00000626274 ROBO2Q9HCK4 1378 aa28.98■■■□□ 2.23
PNKP-219ENST00000626274 STK26Q9P289 416 aa28.96■■■□□ 2.23
PNKP-219ENST00000626274 KNDC1Q76NI1 1749 aa28.96■■■□□ 2.23
PNKP-219ENST00000626274 NEUROD1Q13562 356 aa28.95■■■□□ 2.22
PNKP-219ENST00000626274 ABCC11Q96J66 1382 aa28.95■■■□□ 2.22
PNKP-219ENST00000626274 TECPR2O15040 1411 aa28.94■■■□□ 2.22
PNKP-219ENST00000626274 YTHDC2Q9H6S0 1430 aaKnown RBP28.94■■■□□ 2.22
PNKP-219ENST00000626274 ATF3P18847 181 aa28.94■■■□□ 2.22
PNKP-219ENST00000626274 CADPS2Q86UW7 1296 aa28.94■■■□□ 2.22
PNKP-219ENST00000626274 NALCNQ8IZF0 1738 aa28.93■■■□□ 2.22
PNKP-219ENST00000626274 DCCP43146 1447 aa28.93■■■□□ 2.22
PNKP-219ENST00000626274 ADGRL3Q9HAR2 1447 aa28.93■■■□□ 2.22
PNKP-219ENST00000626274 SLAIN2Q9P270 581 aa28.92■■■□□ 2.22
PNKP-219ENST00000626274 FAM135BQ49AJ0 1406 aa28.91■■■□□ 2.22
PNKP-219ENST00000626274 L3MBTL2Q969R5 705 aa28.89■■■□□ 2.22
PNKP-219ENST00000626274 HSPA1LP34931 641 aa28.88■■■□□ 2.21
PNKP-219ENST00000626274 ADGRB1O14514 1584 aa28.88■■■□□ 2.21
PNKP-219ENST00000626274 ROBO1Q9Y6N7 1651 aa28.87■■■□□ 2.21
PNKP-219ENST00000626274 SIRT1Q96EB6 747 aa28.86■■■□□ 2.21
PNKP-219ENST00000626274 KIAA1210Q9ULL0 1709 aa28.86■■■□□ 2.21
PNKP-219ENST00000626274 WAPLQ7Z5K2 1190 aa28.84■■■□□ 2.21
PNKP-219ENST00000626274 DLC1Q96QB1 1528 aa28.81■■■□□ 2.2
PNKP-219ENST00000626274 MST1RQ04912 1400 aa28.8■■■□□ 2.2
PNKP-219ENST00000626274 PLEKHH1Q9ULM0 1364 aa28.8■■■□□ 2.2
PNKP-219ENST00000626274 TRAK1Q9UPV9 953 aa28.77■■■□□ 2.2
PNKP-219ENST00000626274 CDC42BPGQ6DT37 1551 aa28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms