RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 TRIM26Q12899 539 aaPredicted RBP17.39■□□□□ 0.37
LINC00539-204ENST00000608957 CHD2O14647 1828 aaKnown RBP17.39■□□□□ 0.37
LINC00539-204ENST00000608957 NWD1Q149M9 1564 aa17.38■□□□□ 0.37
LINC00539-204ENST00000608957 TRPM2O94759 1503 aa17.37■□□□□ 0.37
LINC00539-204ENST00000608957 CHGAP10645 457 aaKnown RBP17.37■□□□□ 0.37
LINC00539-204ENST00000608957 SLC26A8Q96RN1 970 aa17.37■□□□□ 0.37
LINC00539-204ENST00000608957 KIF1BO60333 1816 aa17.37■□□□□ 0.37
LINC00539-204ENST00000608957 SENP3Q9H4L4 574 aaPredicted RBP17.36■□□□□ 0.37
LINC00539-204ENST00000608957 PLEKHG1Q9ULL1 1385 aa17.36■□□□□ 0.37
LINC00539-204ENST00000608957 NUTM2DQ5VT03 806 aaPredicted RBP17.34■□□□□ 0.37
LINC00539-204ENST00000608957 NRXN3Q9Y4C0 1643 aa17.34■□□□□ 0.37
LINC00539-204ENST00000608957 ADAMTS13Q76LX8 1427 aa17.33■□□□□ 0.36
LINC00539-204ENST00000608957 TRIM52Q96A61 297 aa17.32■□□□□ 0.36
LINC00539-204ENST00000608957 NEXMIFQ5QGS0 1516 aa17.31■□□□□ 0.36
LINC00539-204ENST00000608957 KCNA6P17658 529 aa17.3■□□□□ 0.36
LINC00539-204ENST00000608957 DIP2AQ14689 1571 aa17.3■□□□□ 0.36
LINC00539-204ENST00000608957 TOM1O60784 492 aa17.29■□□□□ 0.36
LINC00539-204ENST00000608957 PPP1R15AO75807 674 aaPredicted RBP17.29■□□□□ 0.36
LINC00539-204ENST00000608957 PIP4K2BP78356 416 aa17.29■□□□□ 0.36
LINC00539-204ENST00000608957 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
LINC00539-204ENST00000608957 NKTRP30414 1462 aaKnown RBP17.29■□□□□ 0.36
LINC00539-204ENST00000608957 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.28■□□□□ 0.36
LINC00539-204ENST00000608957 SETBP1Q9Y6X0 1596 aa17.28■□□□□ 0.36
LINC00539-204ENST00000608957 BCANQ96GW7 911 aa17.27■□□□□ 0.36
LINC00539-204ENST00000608957 SLC4A1APQ9BWU0 796 aaKnown RBP17.27■□□□□ 0.36
LINC00539-204ENST00000608957 TMEM94Q12767 1356 aa17.27■□□□□ 0.35
LINC00539-204ENST00000608957 PPLO60437 1756 aa17.26■□□□□ 0.35
LINC00539-204ENST00000608957 HDGFP51858 240 aaKnown RBP17.26■□□□□ 0.35
LINC00539-204ENST00000608957 FOXD1Q16676 465 aa17.26■□□□□ 0.35
LINC00539-204ENST00000608957 RBM33Q96EV2 1170 aaKnown RBP17.26■□□□□ 0.35
LINC00539-204ENST00000608957 TBX22Q9Y458 520 aa17.26■□□□□ 0.35
LINC00539-204ENST00000608957 SCAF1Q9H7N4 1312 aaKnown RBP17.25■□□□□ 0.35
LINC00539-204ENST00000608957 PTPRUQ92729 1446 aa17.25■□□□□ 0.35
LINC00539-204ENST00000608957 SETD1AO15047 1707 aaKnown RBP17.24■□□□□ 0.35
LINC00539-204ENST00000608957 HSPA1LP34931 641 aa17.24■□□□□ 0.35
LINC00539-204ENST00000608957 SETD5Q9C0A6 1442 aa17.23■□□□□ 0.35
LINC00539-204ENST00000608957 PROSER2Q86WR7 435 aaPredicted RBP17.23■□□□□ 0.35
LINC00539-204ENST00000608957 XRN1Q8IZH2 1706 aaKnown RBP17.23■□□□□ 0.35
LINC00539-204ENST00000608957 ZNF326Q5BKZ1 582 aaKnown RBP17.22■□□□□ 0.35
LINC00539-204ENST00000608957 IFT172Q9UG01 1749 aa17.21■□□□□ 0.35
LINC00539-204ENST00000608957 MPHOSPH9Q99550 1183 aa17.2■□□□□ 0.34
LINC00539-204ENST00000608957 PIK3R4Q99570 1358 aa17.19■□□□□ 0.34
LINC00539-204ENST00000608957 ROBO1Q9Y6N7 1651 aa17.19■□□□□ 0.34
LINC00539-204ENST00000608957 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.18■□□□□ 0.34
LINC00539-204ENST00000608957 RAB3GAP2Q9H2M9 1393 aa17.18■□□□□ 0.34
LINC00539-204ENST00000608957 METP08581 1390 aa17.17■□□□□ 0.34
LINC00539-204ENST00000608957 SPATA31E1Q6ZUB1 1445 aa17.15■□□□□ 0.34
LINC00539-204ENST00000608957 DISP3Q9P2K9 1392 aa17.15■□□□□ 0.34
LINC00539-204ENST00000608957 FAM135BQ49AJ0 1406 aa17.14■□□□□ 0.33
LINC00539-204ENST00000608957 AMOTL2Q9Y2J4 779 aa17.14■□□□□ 0.33
LINC00539-204ENST00000608957 MED1Q15648 1581 aaPredicted RBP17.14■□□□□ 0.33
LINC00539-204ENST00000608957 MSH6P52701 1360 aa17.14■□□□□ 0.33
LINC00539-204ENST00000608957 CCDC144AA2RUR9 1427 aa17.13■□□□□ 0.33
LINC00539-204ENST00000608957 NCOA3Q9Y6Q9 1424 aa17.13■□□□□ 0.33
LINC00539-204ENST00000608957 NALCNQ8IZF0 1738 aa17.12■□□□□ 0.33
LINC00539-204ENST00000608957 RPGRIP1LQ68CZ1 1315 aa17.11■□□□□ 0.33
LINC00539-204ENST00000608957 ILDR2Q71H61 639 aa17.09■□□□□ 0.33
LINC00539-204ENST00000608957 PHLPP1O60346 1717 aa17.09■□□□□ 0.33
LINC00539-204ENST00000608957 ADGRF5Q8IZF2 1346 aa17.08■□□□□ 0.32
LINC00539-204ENST00000608957 VGFO15240 615 aaPredicted RBP17.08■□□□□ 0.32
LINC00539-204ENST00000608957 RGL3Q3MIN7 710 aa17.07■□□□□ 0.32
LINC00539-204ENST00000608957 ASXL1Q8IXJ9 1541 aa17.06■□□□□ 0.32
LINC00539-204ENST00000608957 ACIN1Q9UKV3 1341 aaKnown RBP17.06■□□□□ 0.32
LINC00539-204ENST00000608957 SLAIN2Q9P270 581 aa17.06■□□□□ 0.32
LINC00539-204ENST00000608957 C19orf44Q9H6X5 657 aa17.05■□□□□ 0.32
LINC00539-204ENST00000608957 PRAG1Q86YV5 1406 aa17.04■□□□□ 0.32
LINC00539-204ENST00000608957 COL16A1Q07092 1604 aaPredicted RBP17.04■□□□□ 0.32
LINC00539-204ENST00000608957 C14orf37Q86TY3 774 aa17.04■□□□□ 0.32
LINC00539-204ENST00000608957 PTCH1Q13635 1447 aa17.04■□□□□ 0.32
LINC00539-204ENST00000608957 ANKRD30BQ9BXX2 1392 aa17.03■□□□□ 0.32
LINC00539-204ENST00000608957 ROBO2Q9HCK4 1378 aa17.03■□□□□ 0.32
LINC00539-204ENST00000608957 DCCP43146 1447 aa17.03■□□□□ 0.32
LINC00539-204ENST00000608957 ADGRL3Q9HAR2 1447 aa17.03■□□□□ 0.32
LINC00539-204ENST00000608957 KNDC1Q76NI1 1749 aa17.02■□□□□ 0.32
LINC00539-204ENST00000608957 PIK3C2GO75747 1445 aa17.02■□□□□ 0.31
LINC00539-204ENST00000608957 AHDC1Q5TGY3 1603 aaPredicted RBP17.01■□□□□ 0.31
LINC00539-204ENST00000608957 HRCP23327 699 aa17.01■□□□□ 0.31
LINC00539-204ENST00000608957 CADPS2Q86UW7 1296 aa17.01■□□□□ 0.31
LINC00539-204ENST00000608957 MST1RQ04912 1400 aa17.01■□□□□ 0.31
LINC00539-204ENST00000608957 NRXN1Q9ULB1 1477 aa17■□□□□ 0.31
LINC00539-204ENST00000608957 NHSL1Q5SYE7 1610 aa16.99■□□□□ 0.31
LINC00539-204ENST00000608957 ATF3P18847 181 aa16.99■□□□□ 0.31
LINC00539-204ENST00000608957 MYOM2P54296 1465 aa16.99■□□□□ 0.31
LINC00539-204ENST00000608957 BRINP3Q76B58 766 aa16.97■□□□□ 0.31
LINC00539-204ENST00000608957 LAMC1P11047 1609 aa16.96■□□□□ 0.31
LINC00539-204ENST00000608957 TECPR2O15040 1411 aa16.96■□□□□ 0.3
LINC00539-204ENST00000608957 SHPRHQ149N8 1683 aa16.95■□□□□ 0.3
LINC00539-204ENST00000608957 TMEM132EQ6IEE7 984 aa16.95■□□□□ 0.3
LINC00539-204ENST00000608957 LRPPRCP42704 1394 aaKnown RBP16.94■□□□□ 0.3
LINC00539-204ENST00000608957 C1orf167Q5SNV9 1468 aa16.93■□□□□ 0.3
LINC00539-204ENST00000608957 PLEKHH1Q9ULM0 1364 aa16.92■□□□□ 0.3
LINC00539-204ENST00000608957 C14orf93Q9H972 538 aaKnown RBP16.92■□□□□ 0.3
LINC00539-204ENST00000608957 YTHDC2Q9H6S0 1430 aaKnown RBP16.92■□□□□ 0.3
LINC00539-204ENST00000608957 CDC42BPGQ6DT37 1551 aa16.92■□□□□ 0.3
LINC00539-204ENST00000608957 ABCC11Q96J66 1382 aa16.91■□□□□ 0.3
LINC00539-204ENST00000608957 CFAP70Q5T0N1 1121 aa16.91■□□□□ 0.3
LINC00539-204ENST00000608957 WAPLQ7Z5K2 1190 aa16.91■□□□□ 0.3
LINC00539-204ENST00000608957 STK26Q9P289 416 aa16.91■□□□□ 0.3
LINC00539-204ENST00000608957 RGS17Q9UGC6 210 aaPredicted RBP16.91■□□□□ 0.3
LINC00539-204ENST00000608957 JCADQ9P266 1359 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms