RNA–Protein interactions for RNA: ENST00000599179.1

LINC00343-207, long intergenic non-protein coding RNA 343, humanhuman

TSL 5

Gene LINC00343, Length 726 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-207ENST00000599179 ARHGEF11O15085 1522 aa13.59□□□□□ -0.23
LINC00343-207ENST00000599179 NUDT18Q6ZVK8 323 aa13.59□□□□□ -0.23
LINC00343-207ENST00000599179 ARHGEF1Q92888 912 aaKnown RBP13.58□□□□□ -0.24
LINC00343-207ENST00000599179 FANCD2Q9BXW9 1451 aa13.57□□□□□ -0.24
LINC00343-207ENST00000599179 CYB5RLQ6IPT4 315 aa13.57□□□□□ -0.24
LINC00343-207ENST00000599179 TTC13Q8NBP0 860 aa13.56□□□□□ -0.24
LINC00343-207ENST00000599179 C3orf80F5H4A9 247 aa13.55□□□□□ -0.24
LINC00343-207ENST00000599179 RNF40O75150 1001 aa13.54□□□□□ -0.24
LINC00343-207ENST00000599179 SLC4A3P48751 1232 aa13.54□□□□□ -0.24
LINC00343-207ENST00000599179 TJAP1Q5JTD0 557 aa13.54□□□□□ -0.24
LINC00343-207ENST00000599179 IL21Q9HBE4 155 aa13.54□□□□□ -0.24
LINC00343-207ENST00000599179 PADI6Q6TGC4 694 aa13.53□□□□□ -0.24
LINC00343-207ENST00000599179 NPDC1Q9NQX5 325 aaPredicted RBP13.53□□□□□ -0.24
LINC00343-207ENST00000599179 SLF2Q8IX21 1173 aa13.52□□□□□ -0.25
LINC00343-207ENST00000599179 MTRQ99707 1265 aa13.51□□□□□ -0.25
LINC00343-207ENST00000599179 URB2Q14146 1524 aaKnown RBP13.49□□□□□ -0.25
LINC00343-207ENST00000599179 LAPTM4AQ15012 233 aa13.48□□□□□ -0.25
LINC00343-207ENST00000599179 TSHZ2Q9NRE2 1034 aa13.47□□□□□ -0.25
LINC00343-207ENST00000599179 SWT1Q5T5J6 900 aaKnown RBP13.46□□□□□ -0.25
LINC00343-207ENST00000599179 KCNV2Q8TDN2 545 aa13.46□□□□□ -0.25
LINC00343-207ENST00000599179 APLP1P51693 650 aa13.45□□□□□ -0.26
LINC00343-207ENST00000599179 P3H3Q8IVL6 736 aa13.45□□□□□ -0.26
LINC00343-207ENST00000599179 PRR14Q9BWN1 585 aa13.45□□□□□ -0.26
LINC00343-207ENST00000599179 ZNF608Q9ULD9 1512 aaPredicted RBP13.44□□□□□ -0.26
LINC00343-207ENST00000599179 CFTRP13569 1480 aa13.44□□□□□ -0.26
LINC00343-207ENST00000599179 ARAP1Q96P48 1450 aa13.44□□□□□ -0.26
LINC00343-207ENST00000599179 MLLT3P42568 568 aaPredicted RBP13.43□□□□□ -0.26
LINC00343-207ENST00000599179 EYA1Q99502 592 aa13.43□□□□□ -0.26
LINC00343-207ENST00000599179 Q6ZNB5 142 aa13.42□□□□□ -0.26
LINC00343-207ENST00000599179 PTGDRQ13258 359 aa13.4□□□□□ -0.26
LINC00343-207ENST00000599179 PPP1R18Q6NYC8 613 aa13.4□□□□□ -0.26
LINC00343-207ENST00000599179 GGCXP38435 758 aa13.39□□□□□ -0.27
LINC00343-207ENST00000599179 RBM46Q8TBY0 533 aaKnown RBP13.38□□□□□ -0.27
LINC00343-207ENST00000599179 ZNF516Q92618 1163 aa13.38□□□□□ -0.27
LINC00343-207ENST00000599179 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.38□□□□□ -0.27
LINC00343-207ENST00000599179 V9GY48 417 aaPredicted RBP13.38□□□□□ -0.27
LINC00343-207ENST00000599179 IFT140Q96RY7 1462 aa13.37□□□□□ -0.27
LINC00343-207ENST00000599179 DNAJB2P25686 324 aa13.37□□□□□ -0.27
LINC00343-207ENST00000599179 PRKD2Q9BZL6 878 aa13.37□□□□□ -0.27
LINC00343-207ENST00000599179 WIZO95785 1651 aa13.36□□□□□ -0.27
LINC00343-207ENST00000599179 COPS2P61201 443 aa13.33□□□□□ -0.28
LINC00343-207ENST00000599179 NUTM2FA1L443 756 aa13.32□□□□□ -0.28
LINC00343-207ENST00000599179 GFRA3O60609 400 aa13.32□□□□□ -0.28
LINC00343-207ENST00000599179 TMUB1Q9BVT8 246 aa13.32□□□□□ -0.28
LINC00343-207ENST00000599179 TMEM134Q9H6X4 195 aa13.32□□□□□ -0.28
LINC00343-207ENST00000599179 PCDHB3Q9Y5E6 796 aa13.32□□□□□ -0.28
LINC00343-207ENST00000599179 ADGRG1Q9Y653 693 aa13.32□□□□□ -0.28
LINC00343-207ENST00000599179 RSF1Q96T23 1441 aaPredicted RBP13.31□□□□□ -0.28
LINC00343-207ENST00000599179 ZPR1O75312 459 aa13.31□□□□□ -0.28
LINC00343-207ENST00000599179 FCHSD2O94868 740 aa13.3□□□□□ -0.28
LINC00343-207ENST00000599179 NRG2O14511 850 aaPredicted RBP13.28□□□□□ -0.28
LINC00343-207ENST00000599179 KMT5BQ4FZB7 885 aa13.28□□□□□ -0.28
LINC00343-207ENST00000599179 NKX2-3Q8TAU0 364 aa13.28□□□□□ -0.28
LINC00343-207ENST00000599179 EIF4G3O43432 1585 aaKnown RBP13.28□□□□□ -0.28
LINC00343-207ENST00000599179 AQRO60306 1485 aaKnown RBP eCLIP13.25□□□□□ -0.29
LINC00343-207ENST00000599179 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.25□□□□□ -0.29
LINC00343-207ENST00000599179 RCCD1A6NED2 376 aa13.25□□□□□ -0.29
LINC00343-207ENST00000599179 TOPBP1Q92547 1522 aa13.23□□□□□ -0.29
LINC00343-207ENST00000599179 SEMA3EO15041 775 aa13.23□□□□□ -0.29
LINC00343-207ENST00000599179 BLOC1S3Q6QNY0 202 aa13.23□□□□□ -0.29
LINC00343-207ENST00000599179 ACTN4O43707 911 aaKnown RBP13.22□□□□□ -0.29
LINC00343-207ENST00000599179 OATP04181 439 aa13.22□□□□□ -0.29
LINC00343-207ENST00000599179 CHD1O14646 1710 aa13.22□□□□□ -0.29
LINC00343-207ENST00000599179 SMYD5Q6GMV2 418 aa13.21□□□□□ -0.29
LINC00343-207ENST00000599179 TRAF7Q6Q0C0 670 aa13.21□□□□□ -0.29
LINC00343-207ENST00000599179 CFHP08603 1231 aa13.2□□□□□ -0.3
LINC00343-207ENST00000599179 HIC1Q14526 733 aa13.2□□□□□ -0.3
LINC00343-207ENST00000599179 RSPH4AQ5TD94 716 aa13.18□□□□□ -0.3
LINC00343-207ENST00000599179 TOP2AP11388 1531 aaKnown RBP13.18□□□□□ -0.3
LINC00343-207ENST00000599179 FAM161AQ3B820 660 aa13.17□□□□□ -0.3
LINC00343-207ENST00000599179 PDZRN3Q9UPQ7 1066 aa13.17□□□□□ -0.3
LINC00343-207ENST00000599179 PXYLP1Q8TE99 480 aa13.16□□□□□ -0.3
LINC00343-207ENST00000599179 NR1I2O75469 434 aa13.15□□□□□ -0.3
LINC00343-207ENST00000599179 TESPA1A2RU30 521 aaPredicted RBP13.14□□□□□ -0.31
LINC00343-207ENST00000599179 RNF223E7ERA6 249 aa13.14□□□□□ -0.31
LINC00343-207ENST00000599179 CLASP1Q7Z460 1538 aa13.13□□□□□ -0.31
LINC00343-207ENST00000599179 PLCB2Q00722 1185 aa13.13□□□□□ -0.31
LINC00343-207ENST00000599179 ANKLE1Q8NAG6 615 aa13.13□□□□□ -0.31
LINC00343-207ENST00000599179 TLL1O43897 1013 aa13.12□□□□□ -0.31
LINC00343-207ENST00000599179 SLC10A3P09131 477 aa13.12□□□□□ -0.31
LINC00343-207ENST00000599179 METTL3Q86U44 580 aaKnown RBP13.12□□□□□ -0.31
LINC00343-207ENST00000599179 TARBP1Q13395 1621 aaKnown RBP13.12□□□□□ -0.31
LINC00343-207ENST00000599179 ABCC8Q09428 1581 aa13.11□□□□□ -0.31
LINC00343-207ENST00000599179 LCE2BO14633 110 aa13.11□□□□□ -0.31
LINC00343-207ENST00000599179 ADH1BP00325 375 aa13.11□□□□□ -0.31
LINC00343-207ENST00000599179 SLC19A1P41440 591 aa13.11□□□□□ -0.31
LINC00343-207ENST00000599179 DNMBPQ6XZF7 1577 aa13.11□□□□□ -0.31
LINC00343-207ENST00000599179 TDRD9Q8NDG6 1382 aaKnown RBP13.09□□□□□ -0.31
LINC00343-207ENST00000599179 POLA1P09884 1462 aaPredicted RBP13.09□□□□□ -0.31
LINC00343-207ENST00000599179 SNAPC4Q5SXM2 1469 aa13.09□□□□□ -0.31
LINC00343-207ENST00000599179 GNPATO15228 680 aa13.08□□□□□ -0.32
LINC00343-207ENST00000599179 CHMP7Q8WUX9 453 aaPredicted RBP13.08□□□□□ -0.32
LINC00343-207ENST00000599179 S1PR4O95977 384 aa13.07□□□□□ -0.32
LINC00343-207ENST00000599179 RBM26Q5T8P6 1007 aaKnown RBP13.07□□□□□ -0.32
LINC00343-207ENST00000599179 GAPVD1Q14C86 1478 aa13.07□□□□□ -0.32
LINC00343-207ENST00000599179 RAD54L2Q9Y4B4 1467 aa13.07□□□□□ -0.32
LINC00343-207ENST00000599179 PRDM2Q13029 1718 aa13.07□□□□□ -0.32
LINC00343-207ENST00000599179 CCDC88BA6NC98 1476 aa13.06□□□□□ -0.32
LINC00343-207ENST00000599179 SPRYD7Q5W111 196 aa13.05□□□□□ -0.32
LINC00343-207ENST00000599179 SYNJ1O43426 1573 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms