RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MYO5BQ9ULV0 1848 aa20.96■□□□□ 0.95
SHKBP1-217ENST00000598558 ZNF326Q5BKZ1 582 aaKnown RBP20.95■□□□□ 0.94
SHKBP1-217ENST00000598558 POLR1AO95602 1720 aaPredicted RBP20.95■□□□□ 0.94
SHKBP1-217ENST00000598558 CCDC144AA2RUR9 1427 aa20.95■□□□□ 0.94
SHKBP1-217ENST00000598558 SLC26A8Q96RN1 970 aa20.94■□□□□ 0.94
SHKBP1-217ENST00000598558 RGL3Q3MIN7 710 aa20.92■□□□□ 0.94
SHKBP1-217ENST00000598558 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.92■□□□□ 0.94
SHKBP1-217ENST00000598558 SPATA31E1Q6ZUB1 1445 aa20.92■□□□□ 0.94
SHKBP1-217ENST00000598558 PCGF6Q9BYE7 350 aa20.91■□□□□ 0.94
SHKBP1-217ENST00000598558 LTBP4Q8N2S1 1624 aa20.9■□□□□ 0.94
SHKBP1-217ENST00000598558 PLEKHG1Q9ULL1 1385 aa20.9■□□□□ 0.94
SHKBP1-217ENST00000598558 PPP1R15AO75807 674 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-217ENST00000598558 HDGFP51858 240 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-217ENST00000598558 IQGAP1P46940 1657 aa20.89■□□□□ 0.94
SHKBP1-217ENST00000598558 NEXMIFQ5QGS0 1516 aa20.88■□□□□ 0.93
SHKBP1-217ENST00000598558 BCANQ96GW7 911 aa20.87■□□□□ 0.93
SHKBP1-217ENST00000598558 ADAMTS13Q76LX8 1427 aa20.87■□□□□ 0.93
SHKBP1-217ENST00000598558 DHX57Q6P158 1386 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-217ENST00000598558 CERKQ8TCT0 537 aa20.86■□□□□ 0.93
SHKBP1-217ENST00000598558 RPGRIP1LQ68CZ1 1315 aa20.85■□□□□ 0.93
SHKBP1-217ENST00000598558 TBX22Q9Y458 520 aa20.84■□□□□ 0.93
SHKBP1-217ENST00000598558 ADGRF5Q8IZF2 1346 aa20.83■□□□□ 0.93
SHKBP1-217ENST00000598558 KIF1BO60333 1816 aa20.83■□□□□ 0.92
SHKBP1-217ENST00000598558 VGFO15240 615 aaPredicted RBP20.81■□□□□ 0.92
SHKBP1-217ENST00000598558 SIN3AQ96ST3 1273 aa20.81■□□□□ 0.92
SHKBP1-217ENST00000598558 KCNA6P17658 529 aa20.79■□□□□ 0.92
SHKBP1-217ENST00000598558 STRCP1A6NGW2 1772 aa20.78■□□□□ 0.92
SHKBP1-217ENST00000598558 NRXN3Q9Y4C0 1643 aa20.78■□□□□ 0.92
SHKBP1-217ENST00000598558 METP08581 1390 aa20.76■□□□□ 0.91
SHKBP1-217ENST00000598558 PTPRUQ92729 1446 aa20.76■□□□□ 0.91
SHKBP1-217ENST00000598558 SETBP1Q9Y6X0 1596 aa20.76■□□□□ 0.91
SHKBP1-217ENST00000598558 RBM33Q96EV2 1170 aaKnown RBP20.75■□□□□ 0.91
SHKBP1-217ENST00000598558 LRRC7Q96NW7 1537 aa20.73■□□□□ 0.91
SHKBP1-217ENST00000598558 PPLO60437 1756 aa20.73■□□□□ 0.91
SHKBP1-217ENST00000598558 KDM2AQ9Y2K7 1162 aa20.73■□□□□ 0.91
SHKBP1-217ENST00000598558 DCAF11Q8TEB1 546 aa20.72■□□□□ 0.91
SHKBP1-217ENST00000598558 CPS1P31327 1500 aa20.72■□□□□ 0.91
SHKBP1-217ENST00000598558 NEUROD1Q13562 356 aa20.71■□□□□ 0.91
SHKBP1-217ENST00000598558 AMOTL2Q9Y2J4 779 aa20.71■□□□□ 0.91
SHKBP1-217ENST00000598558 ALKQ9UM73 1620 aa20.69■□□□□ 0.9
SHKBP1-217ENST00000598558 PROSER2Q86WR7 435 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-217ENST00000598558 IFT172Q9UG01 1749 aa20.69■□□□□ 0.9
SHKBP1-217ENST00000598558 PIK3R4Q99570 1358 aa20.69■□□□□ 0.9
SHKBP1-217ENST00000598558 NRXN1Q9ULB1 1477 aa20.69■□□□□ 0.9
SHKBP1-217ENST00000598558 DIP2AQ14689 1571 aa20.68■□□□□ 0.9
SHKBP1-217ENST00000598558 CFAP70Q5T0N1 1121 aa20.68■□□□□ 0.9
SHKBP1-217ENST00000598558 PIK3C2GO75747 1445 aa20.68■□□□□ 0.9
SHKBP1-217ENST00000598558 NWD1Q149M9 1564 aa20.68■□□□□ 0.9
SHKBP1-217ENST00000598558 TMEM132EQ6IEE7 984 aa20.67■□□□□ 0.9
SHKBP1-217ENST00000598558 C14orf93Q9H972 538 aaKnown RBP20.67■□□□□ 0.9
SHKBP1-217ENST00000598558 TMEM94Q12767 1356 aa20.67■□□□□ 0.9
SHKBP1-217ENST00000598558 ILDR1Q86SU0 546 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-217ENST00000598558 FBXO41Q8TF61 875 aa20.66■□□□□ 0.9
SHKBP1-217ENST00000598558 L3MBTL2Q969R5 705 aa20.66■□□□□ 0.9
SHKBP1-217ENST00000598558 MYOM2P54296 1465 aa20.66■□□□□ 0.9
SHKBP1-217ENST00000598558 CHD2O14647 1828 aaKnown RBP20.64■□□□□ 0.9
SHKBP1-217ENST00000598558 IQSEC2Q5JU85 1478 aa20.64■□□□□ 0.89
SHKBP1-217ENST00000598558 SETD1AO15047 1707 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-217ENST00000598558 NKTRP30414 1462 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-217ENST00000598558 ASXL1Q8IXJ9 1541 aa20.62■□□□□ 0.89
SHKBP1-217ENST00000598558 UBAP1LF5GYI3 381 aa20.61■□□□□ 0.89
SHKBP1-217ENST00000598558 ROBO2Q9HCK4 1378 aa20.59■□□□□ 0.89
SHKBP1-217ENST00000598558 STAC3Q96MF2 364 aa20.59■□□□□ 0.89
SHKBP1-217ENST00000598558 STK26Q9P289 416 aa20.59■□□□□ 0.89
SHKBP1-217ENST00000598558 XRN1Q8IZH2 1706 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-217ENST00000598558 XIRP1Q702N8 1843 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-217ENST00000598558 LRPPRCP42704 1394 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-217ENST00000598558 NBPF1Q3BBV0 1214 aa20.54■□□□□ 0.88
SHKBP1-217ENST00000598558 WAPLQ7Z5K2 1190 aa20.54■□□□□ 0.88
SHKBP1-217ENST00000598558 ABCC11Q96J66 1382 aa20.54■□□□□ 0.88
SHKBP1-217ENST00000598558 PRAG1Q86YV5 1406 aa20.53■□□□□ 0.88
SHKBP1-217ENST00000598558 YTHDC2Q9H6S0 1430 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-217ENST00000598558 ADGRB1O14514 1584 aa20.52■□□□□ 0.88
SHKBP1-217ENST00000598558 PLEKHH1Q9ULM0 1364 aa20.52■□□□□ 0.88
SHKBP1-217ENST00000598558 TOM1O60784 492 aa20.52■□□□□ 0.88
SHKBP1-217ENST00000598558 PIP4K2BP78356 416 aa20.52■□□□□ 0.88
SHKBP1-217ENST00000598558 NBPF8Q3BBV2 869 aa20.52■□□□□ 0.88
SHKBP1-217ENST00000598558 NCOA3Q9Y6Q9 1424 aa20.52■□□□□ 0.87
SHKBP1-217ENST00000598558 PTCH1Q13635 1447 aa20.51■□□□□ 0.87
SHKBP1-217ENST00000598558 C14orf37Q86TY3 774 aa20.5■□□□□ 0.87
SHKBP1-217ENST00000598558 C19orf44Q9H6X5 657 aa20.5■□□□□ 0.87
SHKBP1-217ENST00000598558 TECPR2O15040 1411 aa20.5■□□□□ 0.87
SHKBP1-217ENST00000598558 MSH6P52701 1360 aa20.48■□□□□ 0.87
SHKBP1-217ENST00000598558 CCER1Q8TC90 406 aaPredicted RBP20.48■□□□□ 0.87
SHKBP1-217ENST00000598558 TRAK1Q9UPV9 953 aa20.48■□□□□ 0.87
SHKBP1-217ENST00000598558 SIRT1Q96EB6 747 aa20.47■□□□□ 0.87
SHKBP1-217ENST00000598558 TONSLQ96HA7 1378 aa20.46■□□□□ 0.87
SHKBP1-217ENST00000598558 SLAIN2Q9P270 581 aa20.45■□□□□ 0.86
SHKBP1-217ENST00000598558 SCAF1Q9H7N4 1312 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-217ENST00000598558 CLSPNQ9HAW4 1339 aa20.45■□□□□ 0.86
SHKBP1-217ENST00000598558 ADGRL3Q9HAR2 1447 aa20.44■□□□□ 0.86
SHKBP1-217ENST00000598558 PRAM1Q96QH2 718 aa20.44■□□□□ 0.86
SHKBP1-217ENST00000598558 LAMC1P11047 1609 aa20.44■□□□□ 0.86
SHKBP1-217ENST00000598558 SAFB2Q14151 953 aaKnown RBP eCLIP20.43■□□□□ 0.86
SHKBP1-217ENST00000598558 ATF3P18847 181 aa20.42■□□□□ 0.86
SHKBP1-217ENST00000598558 FAM135BQ49AJ0 1406 aa20.42■□□□□ 0.86
SHKBP1-217ENST00000598558 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.41■□□□□ 0.86
SHKBP1-217ENST00000598558 CADPS2Q86UW7 1296 aa20.41■□□□□ 0.86
SHKBP1-217ENST00000598558 HSPA1LP34931 641 aa20.39■□□□□ 0.85
SHKBP1-217ENST00000598558 KNDC1Q76NI1 1749 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms