RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 IQGAP1P46940 1657 aa16.62■□□□□ 0.25
VRK3-210ENST00000596121 RIMS2Q9UQ26 1411 aa16.62■□□□□ 0.25
VRK3-210ENST00000596121 HRCP23327 699 aa16.58■□□□□ 0.24
VRK3-210ENST00000596121 SLC26A8Q96RN1 970 aa16.58■□□□□ 0.24
VRK3-210ENST00000596121 STRCP1A6NGW2 1772 aa16.56■□□□□ 0.24
VRK3-210ENST00000596121 PLEKHG1Q9ULL1 1385 aa16.55■□□□□ 0.24
VRK3-210ENST00000596121 ACIN1Q9UKV3 1341 aaKnown RBP16.55■□□□□ 0.24
VRK3-210ENST00000596121 FBXO41Q8TF61 875 aa16.55■□□□□ 0.24
VRK3-210ENST00000596121 ZNF326Q5BKZ1 582 aaKnown RBP16.54■□□□□ 0.24
VRK3-210ENST00000596121 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.54■□□□□ 0.24
VRK3-210ENST00000596121 PPP1R15AO75807 674 aaPredicted RBP16.53■□□□□ 0.24
VRK3-210ENST00000596121 HDGFP51858 240 aaKnown RBP16.53■□□□□ 0.24
VRK3-210ENST00000596121 BCANQ96GW7 911 aa16.52■□□□□ 0.24
VRK3-210ENST00000596121 ADAMTS13Q76LX8 1427 aa16.52■□□□□ 0.23
VRK3-210ENST00000596121 NEXMIFQ5QGS0 1516 aa16.5■□□□□ 0.23
VRK3-210ENST00000596121 TBX22Q9Y458 520 aa16.5■□□□□ 0.23
VRK3-210ENST00000596121 CCDC144AA2RUR9 1427 aa16.5■□□□□ 0.23
VRK3-210ENST00000596121 SPATA31E1Q6ZUB1 1445 aa16.5■□□□□ 0.23
VRK3-210ENST00000596121 ANKRD30BQ9BXX2 1392 aa16.5■□□□□ 0.23
VRK3-210ENST00000596121 CPS1P31327 1500 aa16.5■□□□□ 0.23
VRK3-210ENST00000596121 KIF1BO60333 1816 aa16.49■□□□□ 0.23
VRK3-210ENST00000596121 KCNA6P17658 529 aa16.49■□□□□ 0.23
VRK3-210ENST00000596121 LRRC7Q96NW7 1537 aa16.49■□□□□ 0.23
VRK3-210ENST00000596121 IQSEC2Q5JU85 1478 aa16.48■□□□□ 0.23
VRK3-210ENST00000596121 RGL3Q3MIN7 710 aa16.47■□□□□ 0.23
VRK3-210ENST00000596121 NRXN3Q9Y4C0 1643 aa16.47■□□□□ 0.23
VRK3-210ENST00000596121 RBM33Q96EV2 1170 aaKnown RBP16.46■□□□□ 0.23
VRK3-210ENST00000596121 RPGRIP1LQ68CZ1 1315 aa16.45■□□□□ 0.22
VRK3-210ENST00000596121 TRIM26Q12899 539 aaPredicted RBP16.45■□□□□ 0.22
VRK3-210ENST00000596121 PTPRUQ92729 1446 aa16.44■□□□□ 0.22
VRK3-210ENST00000596121 SETBP1Q9Y6X0 1596 aa16.43■□□□□ 0.22
VRK3-210ENST00000596121 METP08581 1390 aa16.43■□□□□ 0.22
VRK3-210ENST00000596121 ADGRF5Q8IZF2 1346 aa16.43■□□□□ 0.22
VRK3-210ENST00000596121 UBAP1LF5GYI3 381 aa16.42■□□□□ 0.22
VRK3-210ENST00000596121 NWD1Q149M9 1564 aa16.42■□□□□ 0.22
VRK3-210ENST00000596121 ALKQ9UM73 1620 aa16.41■□□□□ 0.22
VRK3-210ENST00000596121 TMEM94Q12767 1356 aa16.41■□□□□ 0.22
VRK3-210ENST00000596121 CHD2O14647 1828 aaKnown RBP16.41■□□□□ 0.22
VRK3-210ENST00000596121 VGFO15240 615 aaPredicted RBP16.41■□□□□ 0.22
VRK3-210ENST00000596121 PROSER2Q86WR7 435 aaPredicted RBP16.41■□□□□ 0.22
VRK3-210ENST00000596121 PPLO60437 1756 aa16.41■□□□□ 0.22
VRK3-210ENST00000596121 XIRP1Q702N8 1843 aaKnown RBP16.4■□□□□ 0.22
VRK3-210ENST00000596121 DIP2AQ14689 1571 aa16.4■□□□□ 0.22
VRK3-210ENST00000596121 AMOTL2Q9Y2J4 779 aa16.39■□□□□ 0.21
VRK3-210ENST00000596121 PIK3R4Q99570 1358 aa16.38■□□□□ 0.21
VRK3-210ENST00000596121 NKTRP30414 1462 aaKnown RBP16.37■□□□□ 0.21
VRK3-210ENST00000596121 IFT172Q9UG01 1749 aa16.36■□□□□ 0.21
VRK3-210ENST00000596121 SETD1AO15047 1707 aaKnown RBP16.35■□□□□ 0.21
VRK3-210ENST00000596121 DHX57Q6P158 1386 aaKnown RBP16.34■□□□□ 0.21
VRK3-210ENST00000596121 TOM1O60784 492 aa16.33■□□□□ 0.2
VRK3-210ENST00000596121 PIP4K2BP78356 416 aa16.33■□□□□ 0.2
VRK3-210ENST00000596121 XRN1Q8IZH2 1706 aaKnown RBP16.33■□□□□ 0.2
VRK3-210ENST00000596121 PIK3C2GO75747 1445 aa16.32■□□□□ 0.2
VRK3-210ENST00000596121 NRXN1Q9ULB1 1477 aa16.32■□□□□ 0.2
VRK3-210ENST00000596121 SIN3AQ96ST3 1273 aa16.31■□□□□ 0.2
VRK3-210ENST00000596121 TMEM132EQ6IEE7 984 aa16.3■□□□□ 0.2
VRK3-210ENST00000596121 C14orf93Q9H972 538 aaKnown RBP16.3■□□□□ 0.2
VRK3-210ENST00000596121 KDM2AQ9Y2K7 1162 aa16.3■□□□□ 0.2
VRK3-210ENST00000596121 ASXL1Q8IXJ9 1541 aa16.29■□□□□ 0.2
VRK3-210ENST00000596121 MYOM2P54296 1465 aa16.29■□□□□ 0.2
VRK3-210ENST00000596121 ROBO2Q9HCK4 1378 aa16.29■□□□□ 0.2
VRK3-210ENST00000596121 CFAP70Q5T0N1 1121 aa16.29■□□□□ 0.2
VRK3-210ENST00000596121 DCAF11Q8TEB1 546 aa16.29■□□□□ 0.2
VRK3-210ENST00000596121 SCAF1Q9H7N4 1312 aaKnown RBP16.28■□□□□ 0.2
VRK3-210ENST00000596121 NCOA3Q9Y6Q9 1424 aa16.28■□□□□ 0.2
VRK3-210ENST00000596121 HSPA1LP34931 641 aa16.26■□□□□ 0.19
VRK3-210ENST00000596121 STK26Q9P289 416 aa16.26■□□□□ 0.19
VRK3-210ENST00000596121 MSH6P52701 1360 aa16.26■□□□□ 0.19
VRK3-210ENST00000596121 C14orf37Q86TY3 774 aa16.25■□□□□ 0.19
VRK3-210ENST00000596121 C19orf44Q9H6X5 657 aa16.25■□□□□ 0.19
VRK3-210ENST00000596121 PRAG1Q86YV5 1406 aa16.25■□□□□ 0.19
VRK3-210ENST00000596121 PTCH1Q13635 1447 aa16.24■□□□□ 0.19
VRK3-210ENST00000596121 LRPPRCP42704 1394 aaKnown RBP16.24■□□□□ 0.19
VRK3-210ENST00000596121 WAPLQ7Z5K2 1190 aa16.23■□□□□ 0.19
VRK3-210ENST00000596121 PCGF6Q9BYE7 350 aa16.23■□□□□ 0.19
VRK3-210ENST00000596121 SLAIN2Q9P270 581 aa16.23■□□□□ 0.19
VRK3-210ENST00000596121 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.22■□□□□ 0.19
VRK3-210ENST00000596121 NEUROD1Q13562 356 aa16.22■□□□□ 0.19
VRK3-210ENST00000596121 ABCC11Q96J66 1382 aa16.22■□□□□ 0.19
VRK3-210ENST00000596121 TECPR2O15040 1411 aa16.21■□□□□ 0.19
VRK3-210ENST00000596121 FAM135BQ49AJ0 1406 aa16.21■□□□□ 0.19
VRK3-210ENST00000596121 YTHDC2Q9H6S0 1430 aaKnown RBP16.21■□□□□ 0.19
VRK3-210ENST00000596121 L3MBTL2Q969R5 705 aa16.21■□□□□ 0.19
VRK3-210ENST00000596121 PLEKHH1Q9ULM0 1364 aa16.21■□□□□ 0.19
VRK3-210ENST00000596121 ADGRL3Q9HAR2 1447 aa16.2■□□□□ 0.18
VRK3-210ENST00000596121 ADGRB1O14514 1584 aa16.2■□□□□ 0.18
VRK3-210ENST00000596121 ATF3P18847 181 aa16.19■□□□□ 0.18
VRK3-210ENST00000596121 CADPS2Q86UW7 1296 aa16.19■□□□□ 0.18
VRK3-210ENST00000596121 STAC3Q96MF2 364 aa16.19■□□□□ 0.18
VRK3-210ENST00000596121 NALCNQ8IZF0 1738 aa16.18■□□□□ 0.18
VRK3-210ENST00000596121 MST1RQ04912 1400 aa16.17■□□□□ 0.18
VRK3-210ENST00000596121 LAMC1P11047 1609 aa16.16■□□□□ 0.18
VRK3-210ENST00000596121 ROBO1Q9Y6N7 1651 aa16.16■□□□□ 0.18
VRK3-210ENST00000596121 SIRT1Q96EB6 747 aa16.16■□□□□ 0.18
VRK3-210ENST00000596121 DCCP43146 1447 aa16.16■□□□□ 0.18
VRK3-210ENST00000596121 NBPF1Q3BBV0 1214 aa16.15■□□□□ 0.18
VRK3-210ENST00000596121 KNDC1Q76NI1 1749 aa16.14■□□□□ 0.17
VRK3-210ENST00000596121 BRINP3Q76B58 766 aa16.14■□□□□ 0.17
VRK3-210ENST00000596121 TRAK1Q9UPV9 953 aa16.14■□□□□ 0.17
VRK3-210ENST00000596121 PRAM1Q96QH2 718 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms